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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc06g007390.2.1 | ||||||||
Common Name | LOC101260823 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | LBD | ||||||||
Protein Properties | Length: 239aa MW: 26192.1 Da PI: 8.8567 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.3 | 9.9e-42 | 52 | 151 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrrkCa++C+++pyf ++p+kfa+vhk+FGasnv+kll ++pe++r da++slvyeA++r+rdPvyG++g i++l+qq+++l+ Solyc06g007390.2.1 52 PCAACKLLRRKCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLNQQVQSLQ 142 7****************************************************************************************** PP DUF260 92 aelallkee 100 +el+++++e Solyc06g007390.2.1 143 VELNATRAE 151 ****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.577 | 51 | 152 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-41 | 52 | 149 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MSTKRERLDE IIGKKLKIEN IDASSKLHMQ QIMGRRHIIL EPSCTKLNTI IPCAACKLLR 60 RKCAEECPFS PYFSPHEPQK FAAVHKVFGA SNVSKLLMEV PESQRADAAN SLVYEANVRL 120 RDPVYGCMGA ISTLNQQVQS LQVELNATRA EILRYKYREV TNNLIIASTG IGATVAVAEL 180 PQAPSTPTHP PRPPPPQESF GLVVPSCSSP PSTQSVYATP SSRANFSVIS NNNVPYFD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-45 | 52 | 162 | 11 | 121 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-45 | 52 | 162 | 11 | 121 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc06g007390.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004240624.1 | 1e-176 | LOB domain-containing protein 15-like | ||||
Swissprot | Q9AT61 | 4e-70 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A3Q7GRX2 | 1e-175 | A0A3Q7GRX2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g007390.2.1 | 1e-176 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 5e-73 | LOB domain-containing protein 13 |
Link Out ? help Back to Top | |
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Phytozome | Solyc06g007390.2.1 |
Entrez Gene | 101260823 |
Publications ? help Back to Top | |||
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