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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc06g005330.2.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
MYB |
| Protein Properties |
Length: 237aa MW: 27881.6 Da PI: 9.2869 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc06g005330.2.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 41.9 | 2.3e-13 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+W ++Ed++l+ +v++lG ++W+ a+ g++Rt+k+c++rw +yl
Solyc06g005330.2.1 8 KGPWMEQEDLQLAFYVNLLGDRRWDFLAKVSGLRRTGKSCRLRWVNYL 55
79********************************************97 PP
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| 2 | Myb_DNA-binding | 53.3 | 6.5e-17 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T++E+ l+++++ ++G++ W++Iar++ gRt++++k++w++++
Solyc06g005330.2.1 61 RGKMTPQEERLILELHSKWGNR-WSRIAREVS-GRTDNEIKNYWRTHM 106
89********************.*********.************986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 237 aa
Download sequence Send
to blast |
MAQEAMRKGP WMEQEDLQLA FYVNLLGDRR WDFLAKVSGL RRTGKSCRLR WVNYLHPGLK 60
RGKMTPQEER LILELHSKWG NRWSRIAREV SGRTDNEIKN YWRTHMRKKA QDERKLKKAS 120
SIISPSSSFS NTSSFSSNSP DVDFTPIMKN NERNFYDTGG LQKKVVDHDK GKNMKVYSMD 180
DIWKDIELSE ENETKSTKQI MSSPIWDYCP NTLWMADDQE ENKMFPMFYC LDNQDI*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269|PubMed:16531467}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. {ECO:0000305}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Nishida S,Kakei Y,Shimada Y,Fujiwara T
Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
Plant J., 2017. 91(4): p. 741-753
[PMID:28586097] - Imran QM, et al.
Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
Sci Rep, 2018. 8(1): p. 771
[PMID:29335449]
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