PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g005090.2.1

Common Name

LOC101251889

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 199aa MW: 21710.6 Da PI: 4.906

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g005090.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.5	8.5e-42	45	144	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca++Cvlapyfp ++p kf +h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+ Solyc06g005090.2.1 45 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHRVFGASNIIKFLQELPEFQRADAVSSMVYEANARLRDPVYGCAGAICQLQKQVNELQ 135 7**************************************************************************************** PP DUF260 92 aelallkee 100 ++la++++e Solyc06g005090.2.1 136 VQLAKAQAE 144 **99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.86	44	145	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.7E-42	45	142	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MESSSDTTNA TTITSSPPSS RSVSPSSSSP PNSPPSPQVA VVISPCAACK ILRRRCAEKC 60 VLAPYFPPND PIKFTTAHRV FGASNIIKFL QELPEFQRAD AVSSMVYEAN ARLRDPVYGC 120 AGAICQLQKQ VNELQVQLAK AQAEVVNMQC EQANFMTLFC MENMTQSPPQ QSLDNFTQIN 180 MSILDDNNVG SIWETLWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-43	44	152	10	118	LOB family transfactor Ramosa2.1
5ly0_B	2e-43	44	152	10	118	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g005090.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004240601.1	1e-145	LOB domain-containing protein 1-like
Swissprot	Q9LQR0	5e-70	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A3Q7HI91	1e-144	A0A3Q7HI91_SOLLC; Uncharacterized protein
STRING	Solyc06g005090.2.1	1e-144	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	4e-71	LOB domain-containing protein 1

Link Out ? help Back to Top
Phytozome	Solyc06g005090.2.1
Entrez Gene	101251889

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]