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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc05g056620.1.1 |
Common Name | MADS-MC |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
MIKC_MADS |
Protein Properties |
Length: 245aa MW: 28660.6 Da PI: 8.4354 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc05g056620.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 89.8 | 1.4e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
+ienk+nrqvtfskRr g+ KKA+E+SvLCdaeva+i+fs++gk++eyss
Solyc05g056620.1.1 10 KIENKINRQVTFSKRRGGLVKKAHEISVLCDAEVALIVFSQKGKIFEYSS 59
69**********************************************96 PP
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2 | K-box | 105.6 | 6e-35 | 85 | 176 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
e+ +e+++ e++kLk++i+ Lqr+++h++GedL+s+slk+Lq+LeqqL+++lk iRs+Kn+l++e+i+elqkke+++ een++L+kk++
Solyc05g056620.1.1 85 SESPVQENWSLEYTKLKARIDLLQRNHKHYMGEDLDSMSLKDLQNLEQQLDSALKLIRSRKNQLMHESISELQKKERAILEENNMLTKKIK 175
5666789**********************************************************************************98 PP
K-box 100 e 100
e
Solyc05g056620.1.1 176 E 176
7 PP
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Protein Features
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 31.819 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.4E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.8E-34 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.53E-40 | 2 | 76 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.4E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.2E-30 | 85 | 174 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 17.443 | 90 | 180 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009933 | Biological Process | meristem structural organization |
GO:0010076 | Biological Process | maintenance of floral meristem identity |
GO:0010582 | Biological Process | floral meristem determinacy |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 245 aa
Download sequence Send
to blast |
MGRGKVELRK IENKINRQVT FSKRRGGLVK KAHEISVLCD AEVALIVFSQ KGKIFEYSSD 60 SCMEQILERY ERYSYAERRL LANNSESPVQ ENWSLEYTKL KARIDLLQRN HKHYMGEDLD 120 SMSLKDLQNL EQQLDSALKL IRSRKNQLMH ESISELQKKE RAILEENNML TKKIKEKDKI 180 VEQQGEWHQQ TNQVSTSTSF LLQPHQCLNM GGNYQDEVAE ARRNNELDLN LDSLYPLYNM 240 NKHL*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Function -- GeneRIF ? help
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- MACROCALYX and JOINTLESS interact in the transcriptional regulation of tomato fruit abscission zone development.
[PMID: 22106095] - Data show that APETALA1/fruitfull (AP1/FUL) MADS box genes AP1, TM4 and MBP7 were involved in tomato leaf development and are repressed by lanceolate (LA), which was regulated by miR319.
[PMID: 23771895]
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF448521 | 0.0 | Lycopersicon esculentum MADS-box transcription factor MADS-MC (MADS-MC) mRNA, complete cds |
Publications
? help Back to Top |
- Vrebalov J, et al.
A MADS-box gene necessary for fruit ripening at the tomato ripening-inhibitor (rin) locus. Science, 2002. 296(5566): p. 343-6 [PMID:11951045] - Litt A,Irish VF
Duplication and diversification in the APETALA1/FRUITFULL floral homeotic gene lineage: implications for the evolution of floral development. Genetics, 2003. 165(2): p. 821-33 [PMID:14573491] - Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] - Jaillon O, et al.
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] - Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] - Nakano T, et al.
MACROCALYX and JOINTLESS interact in the transcriptional regulation of tomato fruit abscission zone development. Plant Physiol., 2012. 158(1): p. 439-50 [PMID:22106095] - Burko Y, et al.
A role for APETALA1/fruitfull transcription factors in tomato leaf development. Plant Cell, 2013. 25(6): p. 2070-83 [PMID:23771895] - Grimplet J,Martínez-Zapater JM,Carmona MJ
Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]
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