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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc05g056040.2.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
ARF |
Protein Properties |
Length: 651aa MW: 74231.9 Da PI: 5.4061 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc05g056040.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 69.8 | 3.6e-22 | 129 | 229 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
f+k lt+sd ++ l++p k a ++ ++k++ ++l+ +d++g++W++k+ ++++++r+ lt+GW+ Fv +++L +gD vvF
Solyc05g056040.2.1 129 FCKCLTQSDIKSNWGLSVPLKDAVKCfppldmRQEKPC-QELIAKDLKGNEWRFKHAHQGQPRRHSLTNGWSTFVTSKKLLAGDLVVFL-- 216
99****************************97444455.59************************************************.. PP
SSSEE..EEEEE- CS
B3 86 grsefelvvkvfr 98
++++++l+v+++r
Solyc05g056040.2.1 217 RDETGKLHVGIRR 229
569999*****98 PP
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2 | Auxin_resp | 28 | 9.3e-11 | 254 | 313 | 1 | 59 |
Auxin_resp 1 aahaastksvFevvYnPra.stseFvvkvekvekalkvkvsvGmRfkmafetedsserrl 59
a+ha++tks F v+ +P ++s+F+ +++k+ + ++ + vGm +m++e+ed + r
Solyc05g056040.2.1 254 ASHAFATKSLFFVYQKPCYnKSSQFIMSMSKYFEGGNHGIGVGMISRMQIESEDYCHVRR 313
689**************861678*******************************877665 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 651 aa
Download sequence Send
to blast |
MVDQLRFSQQ KYLNHMPFKG DDDLCREIWK ACSGSLLDVS KAGERVYYFP RLHVEQLEQS 60 SNQELIEKLQ LSNLPPKILC RVLHIRLLVE HETEEVYAET ILIPNQDQNE PTAADFSPLD 120 NPRPQFQSFC KCLTQSDIKS NWGLSVPLKD AVKCFPPLDM RQEKPCQELI AKDLKGNEWR 180 FKHAHQGQPR RHSLTNGWST FVTSKKLLAG DLVVFLRDET GKLHVGIRRL SYQHCSVGAS 240 TFSRQSMEVV LAVASHAFAT KSLFFVYQKP CYNKSSQFIM SMSKYFEGGN HGIGVGMISR 300 MQIESEDYCH VRRTNDLEQI SLSQSQQTTN FMLEEDQYMQ DSEAVLDCAQ STMIDLEIRQ 360 QTIGSLNNIH CFAPVEDNGL QLHAAVAREN NEGSIPKDTV STHTRDEDLY ELFKDFDFPD 420 STNTSLDTIA LDLGSDWFRS TLQEQEETVT PSQPNASEDH SRRTSSVLEH PNSFRVMSIS 480 SNPSQIPYEG PGRGDEQVPW GGYQVARRTL PILSRVVSRY PDSLVNFRVA SSILQSVYLE 540 ILAELVYFLD NLTIVNLSKD QFNVARQHIW DLKLSGIEIG WLENRLLHID EVFSMESLLQ 600 RRQALTRRME ETFKQLDGEL GCIDKELHEL SLKVGPNSPM RLQSVLEGLL *
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4ldv_A | 2e-86 | 22 | 307 | 17 | 302 | Auxin response factor 1 |
4ldw_A | 2e-86 | 22 | 307 | 17 | 302 | Auxin response factor 1 |
4ldw_B | 2e-86 | 22 | 307 | 17 | 302 | Auxin response factor 1 |
4ldy_A | 2e-86 | 22 | 307 | 17 | 302 | Auxin response factor 1 |
4ldy_B | 2e-86 | 22 | 307 | 17 | 302 | Auxin response factor 1 |
Search in ModeBase |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | HM565129 | 0.0 | Solanum lycopersicum auxin response factor 13-1 (ARF13-1) mRNA, complete cds, alternatively spliced |