PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 168aa MW: 19148.7 Da PI: 9.7743

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc05g054660.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.00096	27	49	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H Solyc05g054660.1.1 27 FECKTCNRQFSSFQALGGHRASH 49 89**********99999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.83E-8	25	94	No hit	No description
Pfam	PF13912	1.1E-12	26	51	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.2	27	49	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.242	27	54	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	29	49	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.4E-10	71	96	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.203	72	96	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.27	72	94	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	74	94	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MTNYLMLFSS QENHFNTMVN NSPNRVFECK TCNRQFSSFQ ALGGHRASHK KPRLMGEMNF 60 HLPISPPKPK THECSICGLE FPIGQALGGH MRRHRGMLNE NNNNNNNNNN NNNNNNNNNN 120 NNNNNNVLKK LKNPRVLCLD LNLTPLENDH LELIKLKKEA PKVDCFL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc05g054660.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC205681	0.0	Solanum lycopersicum chromosome 5 clone C05HBa0025A19, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025886782.1	1e-115	zinc finger protein ZAT11-like
TrEMBL	A0A1U8GU69	2e-80	A0A1U8GU69_CAPAN; zinc finger protein ZAT11-like
STRING	Solyc05g054660.1.1	1e-114	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA366	24	150
Representative plant	OGRP131	15	149

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	9e-33	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Solyc05g054660.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]