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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Solyc05g053420.1.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
GRAS |
| Protein Properties |
Length: 473aa MW: 54260.3 Da PI: 6.5107 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc05g053420.1.1 | genome | ITAG | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 276.4 | 8.8e-85 | 100 | 470 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl....fs 85
lve Ll+ Ae v ++++ +a+++L++ + +s++g+++qRl+ yf +AL++r+ r ++ ++k ++++ ++ +++l+ l+l +
Solyc05g053420.1.1 100 LVENLLASAEKVGQEQFDRARRILNEFCDKlCSNTGNAVQRLVYYFSQALHERIDReTGRDTSKGNEMKRLV-QHIEHSLMNLNLtmiaAH 189
5789*********************987666*************************6666666666555554.444444444444455688 PP
GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
+ P+ ++s+++a qaI + v ++++vHiiD+ i+ GlQW L+qaL s + +l+iT++ + k+++ee +erL +fA++l++pf
Solyc05g053420.1.1 190 QNIPLSQVSQFAAVQAIIDHVGESKKVHIIDLKIGSGLQWTILMQALVSH--QIKHLKITALCT---NLKHKIEEARERLMDFAKSLNLPF 275
999**********************************************7..556*******99...46999******************* PP
GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
+fn++++k++++l+ e+++++ +E++a+ ++ l+ +l+++ +l+s +++++k+++P+ ++vve ea+hns+ F++rf+eal +y a+
Solyc05g053420.1.1 276 SFNIVMVKDMTELKKEDFEIDDDESIAIFAQYILMWMLARPDKLDS----LMRVIKGINPRALIVVEVEANHNSPVFVDRFVEALFFYGAF 362
**************************************77777777....***************************************** PP
GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357
fdsle + +++++r+ E e l++ i+++va+eg+er+ rh ++ Wr+ + + +++++ls + qa+l+l++++ + ++e ++++
Solyc05g053420.1.1 363 FDSLEDCMKNDERNRTATELEHLSQGIRSIVATEGEERTIRHVKVDVWRAFFARYRMEEMELSMSSLYQANLVLKNFAcGSCCTLEMNKNC 453
******************************************************************************9999********* PP
GRAS 358 lvlgWkdrpLvsvSaWr 374
l++gWk+ pL s+SaW+
Solyc05g053420.1.1 454 LLIGWKGTPLSSLSAWK 470
****************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 473 aa
Download sequence Send
to blast |
MCDHSHQQSP LPSSFKILKD YDTTRFMKRS KTEQNIIVSA ECIKENNGSM LSTDEILRLG 60
AERFIQSFTL RGDQEPYMFN HPFASSLLDL HEEDTRNVSL VENLLASAEK VGQEQFDRAR 120
RILNEFCDKL CSNTGNAVQR LVYYFSQALH ERIDRETGRD TSKGNEMKRL VQHIEHSLMN 180
LNLTMIAAHQ NIPLSQVSQF AAVQAIIDHV GESKKVHIID LKIGSGLQWT ILMQALVSHQ 240
IKHLKITALC TNLKHKIEEA RERLMDFAKS LNLPFSFNIV MVKDMTELKK EDFEIDDDES 300
IAIFAQYILM WMLARPDKLD SLMRVIKGIN PRALIVVEVE ANHNSPVFVD RFVEALFFYG 360
AFFDSLEDCM KNDERNRTAT ELEHLSQGIR SIVATEGEER TIRHVKVDVW RAFFARYRME 420
EMELSMSSLY QANLVLKNFA CGSCCTLEMN KNCLLIGWKG TPLSSLSAWK FS*
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