![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc05g053330.2.1 | ||||||||
Common Name | LOC101265734 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 319aa MW: 36923.1 Da PI: 6.7925 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.4e-18 | 38 | 85 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd l++ ++ +G g+W++ ar+ g++Rt+k+c++rw++yl Solyc05g053330.2.1 38 RGPWTVEEDFTLINFIAHHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 85 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.4 | 2.4e-16 | 91 | 134 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Solyc05g053330.2.1 91 RGNITVEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 134 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.459 | 33 | 85 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.49E-31 | 35 | 132 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-15 | 37 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-16 | 38 | 85 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 39 | 92 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.44E-11 | 40 | 85 | No hit | No description |
PROSITE profile | PS51294 | 23.666 | 86 | 140 | IPR017930 | Myb domain |
SMART | SM00717 | 5.6E-15 | 90 | 138 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-15 | 91 | 134 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-23 | 93 | 139 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.56E-11 | 95 | 134 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009620 | Biological Process | response to fungus | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 319 aa Download sequence Send to blast |
MDYHGQKIEV ISGRGREGGR GDSKEEIKEE EIVMDLRRGP WTVEEDFTLI NFIAHHGEGR 60 WNSLARCAGL KRTGKSCRLR WLNYLRPDVR RGNITVEEQL LILELHSRWG NRWSKIAQHL 120 PGRTDNEIKN YWRTRVQKHA KQLKCDVNSK QFKDTMKYLW MPRLAERIQA AAATSNPTAA 180 SSSGPTTTYI QSQEIQHLLP NMNHHVPEYL PIQLMNIEKT NSLNYSATST SSDNYSSDLT 240 DGCYNFSINQ SNNQDHSHVN QSTNQLLYEE STINPTSYNF HPGFQGFQEV DQQNNTQWME 300 NPWNIEDMCF LQQLNNDM* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 33 | 138 | 2 | 106 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00334 | DAP | Transfer from AT3G06490 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc05g053330.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004239882.1 | 0.0 | transcription factor MYB78-like | ||||
TrEMBL | A0A3Q7GN67 | 0.0 | A0A3Q7GN67_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g053330.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1397 | 23 | 75 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G49620.1 | 2e-85 | myb domain protein 78 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc05g053330.2.1 |
Entrez Gene | 101265734 |
Publications ? help Back to Top | |||
---|---|---|---|
|