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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g052850.2.1 | ||||||||
Common Name | LOC101252587 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 375aa MW: 40620.8 Da PI: 7.2597 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.2 | 5.9e-16 | 47 | 92 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + +W++eEd l ++v+++G ++W+ Ia+ + gR++k+c++rw + Solyc05g052850.2.1 47 KEPWSPEEDAVLTELVNKFGARNWSMIAQGIA-GRSGKSCRLRWCNQ 92 679*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.4 | 3e-17 | 99 | 143 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd ++++a+ +G++ W++Ia+ ++ gRt++ +k++w++ Solyc05g052850.2.1 99 RKPFTDEEDHIIINAHGVHGNK-WAAIAKLLP-GRTDNAIKNHWNST 143 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.96 | 42 | 93 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.27E-31 | 44 | 140 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.9E-14 | 46 | 95 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 47 | 92 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.07E-13 | 49 | 91 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.2E-26 | 49 | 100 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.156 | 94 | 148 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-15 | 98 | 146 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-15 | 99 | 143 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.68E-11 | 101 | 144 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-23 | 101 | 147 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MNEKAEQNGY AAAGEGHGGD GGCSLVDAGD AMLNGGRGSR VSSGRVKEPW SPEEDAVLTE 60 LVNKFGARNW SMIAQGIAGR SGKSCRLRWC NQLDPVLKRK PFTDEEDHII INAHGVHGNK 120 WAAIAKLLPG RTDNAIKNHW NSTLRRRFAG VWRVKPIRSM MLDDSSIYKA RALSEETMSC 180 EGVNQTKPLE MLEVSRTECI PSQSENKAQI YEMCCIPEET PHFTSERSRP TSIGNSDPPA 240 LHPTQKIGAF NVYNPSVTSR IVPMQGPLIH TFSPDFDICK LLEGVSGETI VPQGCGHGCC 300 AATSKSSSKS SLLGPEFVDY EEHPPLLSHE LASMATDLNN IAWIKSGLEK AGKLSSLATS 360 QRNSQRSSAQ VGFG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-39 | 46 | 147 | 6 | 107 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.16847 | 0.0 | fruit| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g052850.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004239924.1 | 0.0 | transcription factor MYB1 | ||||
TrEMBL | A0A3Q7HG28 | 0.0 | A0A3Q7HG28_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g052850.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2611 | 24 | 54 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 3e-89 | myb domain protein 109 |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g052850.2.1 |
Entrez Gene | 101252587 |
Publications ? help Back to Top | |||
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