PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g052410.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 400aa    MW: 44712.3 Da    PI: 4.3641
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g052410.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.3e-2072122155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++y+GVr++  +g+WvAeIr+p     +  +r +lg+f+ta eAa a+++a+++++g
  Solyc05g052410.1.1  72 CKYRGVRQRT-WGKWVAEIREP-----HrgRRLWLGTFDTAIEAALAYDEAARAMYG 122
                         79*****999.**********6.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-1472122IPR001471AP2/ERF domain
CDDcd000181.53E-3172131No hitNo description
PROSITE profilePS5103221.50973130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-3173131IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-2173131IPR016177DNA-binding domain
SMARTSM003803.0E-3473136IPR001471AP2/ERF domain
PRINTSPR003678.8E-107485IPR001471AP2/ERF domain
PRINTSPR003678.8E-1096112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MMLPMDYTRK KKSRSRKDAP KNVAETLAKW KEVNEKLDAC DDDGRKPVRK VPAKGSKKGC  60
MKGKGGPDNG RCKYRGVRQR TWGKWVAEIR EPHRGRRLWL GTFDTAIEAA LAYDEAARAM  120
YGPCARLNLP DYYASSKESS KDDSSLPTVS RSDSNTASSF SEVCPAGDMM RGRANVPAAR  180
HEDRSIEIDG ARTGSNEIGT PLSSLREEAE DETKEVSDKS ETFTPLSSLR EQAEDEAKQV  240
LDKSETFEIK DEPAACSYDS WDIGQEDLGN FCLDDEMFDV NELLGMMDST PVDASAPSQD  300
VGFVPPKQEQ YAYDPSYQLH SAAYDANQLS NPAYQLDNAD DQFSNPLYQL DNAGVDTLEG  360
LQQMEQQSPI EVDYDFDFLR PGRQEDFHFC LDELDVLDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1663133575Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.152860.0callus| fruit| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g052410.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6989020.0Solanum lycopersicum DREB2 (DREB2) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001316142.20.0ethylene response factor H.14
RefseqXP_010321452.10.0ethylene-responsive transcription factor 1 isoform X1
TrEMBLA0A1J0M6870.0A0A1J0M687_SOLLC; Dehydration responsive element binding protein 2A-like protein
STRINGSolyc05g052410.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37012445
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.11e-34DRE-binding protein 2A
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]