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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc05g052040.1.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
ERF |
| Protein Properties |
Length: 366aa MW: 41514.7 Da PI: 9.3677 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc05g052040.1.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 56.9 | 5.2e-18 | 210 | 260 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr+++ +g+++AeIrdp+ +r++lg+f+ta +Aa a+++a+ +l+g
Solyc05g052040.1.1 210 RYRGVRQRP-WGKFAAEIRDPTRK--GTRVWLGTFDTAMDAAMAYDRAAFRLRG 260
8********.**********8542..4*************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 366 aa
Download sequence Send
to blast |
MDKPHKWLPC SNQEGPKKPP LKLKFSTLYN LHFHSSFSTQ FNYQQYFSRK KMDSSSLEMI 60
RQHLLDDVVF METCSSSSSS SLETTSSTLY SQTSSNSESL ESLTSEIKLE SNFSVYPDFI 120
NTPQSSNLES VSRFFDNSTI EFQAKPQKKR SFNDRKPSLN ISIPSVKKTE EPKTGEVKTG 180
EPKTEEPKTG EVKTEYSVKE KMVENSEKKR YRGVRQRPWG KFAAEIRDPT RKGTRVWLGT 240
FDTAMDAAMA YDRAAFRLRG SKAILNFPLE VSNFKQENHE IEKNVVNLNS NTNSCGKRVR 300
GEMENDDGIV MKKEVKREQM VATPLTPSNW SSIWDCGNGK GIFEVPPLSP LSPHSNFGYS 360
QLLVS*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots. Not expressed in cell culture. {ECO:0000269|PubMed:11440157, ECO:0000269|PubMed:7756828}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF204784 | 0.0 | Lycopersicon esculentum ripening regulated protein DDTFR10/A (DDTFR10/A) mRNA, partial cds |
