PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HD-ZIP

Protein Properties

Length: 314aa MW: 35640.9 Da PI: 4.4467

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc05g051460.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.5	2.2e-18	64	117	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV +WFqNrRa++k Solyc05g051460.2.1 64 KKRRLRVDQVKALEKNFEVDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWK 117 45578899*********************************************9 PP
2	HD-ZIP_I/II	127.2	7.3e-41	63	155	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl +qvk+LE++Fe ++kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlE+dy++Lk+++d+lk++ e++++++e+L +e+ Solyc05g051460.2.1 63 EKKRRLRVDQVKALEKNFEVDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYNVLKANFDSLKHNYESIQHDNEALLKEI 153 69*************************************************************************************9999 PP HD-ZIP_I/II 92 ke 93 +e Solyc05g051460.2.1 154 NE 155 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.151	59	119	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.84E-19	61	121	IPR009057	Homeodomain-like
SMART	SM00389	4.1E-17	62	123	IPR001356	Homeobox domain
Pfam	PF00046	1.3E-15	64	117	IPR001356	Homeobox domain
CDD	cd00086	9.16E-16	64	120	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.1E-19	67	126	IPR009057	Homeodomain-like
PRINTS	PR00031	7.8E-6	90	99	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	94	117	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.8E-6	99	115	IPR000047	Helix-turn-helix motif
Pfam	PF02183	8.0E-18	119	160	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009637	Biological Process	response to blue light
GO:0030308	Biological Process	negative regulation of cell growth
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0048573	Biological Process	photoperiodism, flowering
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MKRVRSNDSL GAPLISMCQN TADEENNWNN HAYSRDFQIQ SMLESLDDDE ATTYVEESGV 60 GSEKKRRLRV DQVKALEKNF EVDNKLEPER KVKLAQELGL QPRQVAIWFQ NRRARWKTKQ 120 LERDYNVLKA NFDSLKHNYE SIQHDNEALL KEINELKSKL HGGNSEIKIA VKEEAFDSES 180 DDKRTEQSNQ CNNSNTELNF DTIIMNPSIN FTDFKDGSSD SDSSAILNED NAVISSGAFL 240 IKSGSGSGSS SPDSNSSLNC FQFLESNEVN FSSSQFVKLE EHNFFNGEES CSTLLFTDEQ 300 APTLHWYCPD DWN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	119	RRARWKTKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.15893	0.0	leaf\| root

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00051	PBM	Transfer from AT4G40060	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc05g051460.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004240025.1	0.0	homeobox-leucine zipper protein ATHB-6
TrEMBL	A0A3Q7GL15	0.0	A0A3Q7GL15_SOLLC; Uncharacterized protein
STRING	Solyc05g051460.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2718	24	53
Representative plant	OGRP129	16	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	3e-67	homeobox protein 6

Link Out ? help Back to Top
Phytozome	Solyc05g051460.2.1
Entrez Gene	101257770

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]