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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc05g051380.2.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
AP2 |
| Protein Properties |
Length: 502aa MW: 55822.3 Da PI: 6.6918 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc05g051380.2.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 30.8 | 7.1e-10 | 221 | 277 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++gr++A+++d ++ g rk + g ++ +++Aa+ ++ a++k++g
Solyc05g051380.2.1 221 SIYRGVTRHRWTGRYEAHLWDnSCKrEGqARKGRQ-GGYDKEDKAARSYDLAALKYWG 277
57*******************88885555446666.7799999*************98 PP
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| 2 | AP2 | 49.4 | 1.1e-15 | 322 | 371 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g
Solyc05g051380.2.1 322 YRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 371
9***************988532...5************************998 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 502 aa
Download sequence Send
to blast |
MAPENNNWLS FSLSSMEMLN SSSSSSSMLQ SNAPSAPTHQ YYFADNFYPH GWMNVPKTHE 60
LMYSGDEKQI YHPNVFIDSQ IIHHQHHHHP PPKLEDFFGG ETETQDSSSL THIYDHHHHH 120
GGGAAAGDGG YFNNGQQDVN HNYSIAVGGF QTLPTNSGSE VDDSQVMGSE FATESSNEIY 180
PPIITLGVNN NSNTNSEKAI VTAVNSEGCK KITDTFGQRT SIYRGVTRHR WTGRYEAHLW 240
DNSCKREGQA RKGRQGGYDK EDKAARSYDL AALKYWGTTA TTNFPASDYT KEIEEMKHMT 300
KQEFIASLRR KSSGFSRGAS MYRGVTRHHQ QGRWQARIGR VAGNKDLYLG TFATEEEAAE 360
AYDIAAIKFR GLNAVTNFEM NRYDVEAIMK SSLPIGGAAK RLKISLESEQ KQSLNDNYQQ 420
TLHNGVNNSS SNNSINFGAI SPVSAIPCGL PFDANQPYYH HSFFPHLQYS SNDGGASDHT 480
SGTMPLLPPP AEIFIWPHQS Y*
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| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Detected in inflorescence and youg floral mersitems, and in stem procambial cells. In floral mersitems, mostly expressed in the central dome. Disappears progressively from sepal primordia, but accumulates in second, third and fourth whorl organ primordia. Later, confined to occasional patches in stamens and in petal before disparearing progressively from flowers. {ECO:0000269|PubMed:15988559}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, hypocotyl, inflorescence, siliques, and pistils. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16307362}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Krizek BA
Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
BMC Res Notes, 2015. 8: p. 556
[PMID:26459062] - Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
Plant Physiol., 2016. 170(1): p. 283-93
[PMID:26537561] - Krizek BA, et al.
RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
Plant Physiol., 2016. 171(3): p. 2069-84
[PMID:27208279] - Du Y,Scheres B
PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
[PMID:29078398]
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