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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g051380.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | AP2 | ||||||||
Protein Properties | Length: 502aa MW: 55822.3 Da PI: 6.6918 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 30.8 | 7.1e-10 | 221 | 277 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++ g rk + g ++ +++Aa+ ++ a++k++g Solyc05g051380.2.1 221 SIYRGVTRHRWTGRYEAHLWDnSCKrEGqARKGRQ-GGYDKEDKAARSYDLAALKYWG 277 57*******************88885555446666.7799999*************98 PP | |||||||
2 | AP2 | 49.4 | 1.1e-15 | 322 | 371 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Solyc05g051380.2.1 322 YRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 371 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.7E-7 | 221 | 277 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.03E-19 | 221 | 287 | No hit | No description |
SuperFamily | SSF54171 | 1.96E-13 | 221 | 287 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-11 | 222 | 286 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.977 | 222 | 285 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-20 | 222 | 291 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-6 | 223 | 234 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.34E-11 | 320 | 379 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-18 | 320 | 380 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-18 | 321 | 379 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.335 | 321 | 379 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-30 | 321 | 385 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.5E-10 | 322 | 371 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-6 | 361 | 381 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 502 aa Download sequence Send to blast |
MAPENNNWLS FSLSSMEMLN SSSSSSSMLQ SNAPSAPTHQ YYFADNFYPH GWMNVPKTHE 60 LMYSGDEKQI YHPNVFIDSQ IIHHQHHHHP PPKLEDFFGG ETETQDSSSL THIYDHHHHH 120 GGGAAAGDGG YFNNGQQDVN HNYSIAVGGF QTLPTNSGSE VDDSQVMGSE FATESSNEIY 180 PPIITLGVNN NSNTNSEKAI VTAVNSEGCK KITDTFGQRT SIYRGVTRHR WTGRYEAHLW 240 DNSCKREGQA RKGRQGGYDK EDKAARSYDL AALKYWGTTA TTNFPASDYT KEIEEMKHMT 300 KQEFIASLRR KSSGFSRGAS MYRGVTRHHQ QGRWQARIGR VAGNKDLYLG TFATEEEAAE 360 AYDIAAIKFR GLNAVTNFEM NRYDVEAIMK SSLPIGGAAK RLKISLESEQ KQSLNDNYQQ 420 TLHNGVNNSS SNNSINFGAI SPVSAIPCGL PFDANQPYYH HSFFPHLQYS SNDGGASDHT 480 SGTMPLLPPP AEIFIWPHQS Y* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected in inflorescence and youg floral mersitems, and in stem procambial cells. In floral mersitems, mostly expressed in the central dome. Disappears progressively from sepal primordia, but accumulates in second, third and fourth whorl organ primordia. Later, confined to occasional patches in stamens and in petal before disparearing progressively from flowers. {ECO:0000269|PubMed:15988559}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, hypocotyl, inflorescence, siliques, and pistils. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16307362}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g051380.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004240254.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL6 | ||||
Swissprot | Q52QU2 | 1e-154 | AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6 | ||||
TrEMBL | A0A3Q7GIR4 | 0.0 | A0A3Q7GIR4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g051380.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2580 | 24 | 49 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.2 | 1e-136 | AINTEGUMENTA-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g051380.2.1 |