PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 190aa MW: 21960.9 Da PI: 10.5027

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc05g050790.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.3	8.1e-18	63	113	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp++ g +r +lg++ t+e+Aa a+++ + kl+g Solyc05g050790.1.1 63 RYRGVRRRP-WGKFAAEIRDPKKKG--ARLWLGTYVTPEDAALAYDRTAFKLKG 113 8******.******96643..**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	7.26E-30	62	123	No hit	No description
SuperFamily	SSF54171	1.18E-21	63	122	IPR016177	DNA-binding domain
SMART	SM00380	9.4E-34	63	127	IPR001471	AP2/ERF domain
Pfam	PF00847	3.6E-12	63	113	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.617	63	121	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.0E-30	63	122	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.0E-12	64	75	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.0E-12	103	123	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MHQENSTQFD LSILDSPLEH QFNGFNLESI SFDRSIDHTW EKIDKNEDNI PRSSSQVSNN 60 WKRYRGVRRR PWGKFAAEIR DPKKKGARLW LGTYVTPEDA ALAYDRTAFK LKGTRALLNF 120 PHLIDTNVAE LNRVRPKQRS RLSEIIKGEE IPSPKRRNPQ LINNIAKVNS IIHMFEITSL 180 AFHPQGENK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-29	62	127	4	69	ATERF1
3gcc_A	2e-29	62	127	4	69	ATERF1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc05g050790.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010321615.1	1e-139	ethylene-responsive transcription factor 13-like
TrEMBL	A0A3Q7HEW4	1e-127	A0A3Q7HEW4_SOLLC; Uncharacterized protein
STRING	Solyc05g050790.1.1	1e-138	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	3e-38	ethylene-responsive element binding factor 13

Link Out ? help Back to Top
Phytozome	Solyc05g050790.1.1
Entrez Gene	104647682

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]