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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g050170.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 186aa MW: 21158.1 Da PI: 6.0749 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.3 | 0.00052 | 18 | 40 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ C+++F + s++++Hi+ H Solyc05g050170.1.1 18 FCTVCNEMFHTYSEFVNHIQItH 40 6******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 19 | 40 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MHNANFSPFS GPSPILHFCT VCNEMFHTYS EFVNHIQITH PLSSEQDIIL HSSVYASVTF 60 LPGNPLSTQP AAPRNVRPER NNNIVIMPTP SSNLNHPMIS RDRALPIDRQ LMARRNWFVP 120 IRRGTTPIMD REQMEKRNMV ESSREAIADR TIPLIDQLDV PISSNANELI NIDEEHIDLD 180 LELRL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g050170.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU914757 | 2e-81 | S.lycopersicum DNA sequence from clone LE_HBa-34P15, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3Q7GKE6 | 1e-132 | A0A3Q7GKE6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g050170.1.1 | 1e-132 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14568 | 2 | 2 |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g050170.1.1 |
Publications ? help Back to Top | |||
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