PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 216aa MW: 23677 Da PI: 4.8347

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc05g048740.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.4	5.2e-43	54	153	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpee+r da++s+vyeA+ar+rdPvyG++g i +lq+q+++l+ Solyc05g048740.2.1 54 PCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKMLQELPEEQRVDAVNSMVYEANARIRDPVYGCAGAICQLQKQISELQ 144 7**************************************************************************************** PP DUF260 92 aelallkee 100 ae a++++e Solyc05g048740.2.1 145 AEFAKAQAE 153 ***9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.379	53	154	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-42	54	151	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MECSDHKTTT TISSMNSSSS TFASTISTTP TSGLLSPKSS ILLSTPPMNV VLSPCAACKI 60 LRRRCVEKCV LAPYFPPTDP LKFTIAHRVF GASNIIKMLQ ELPEEQRVDA VNSMVYEANA 120 RIRDPVYGCA GAICQLQKQI SELQAEFAKA QAEILNLKCQ NSNLLALVCM EVSENSSNSL 180 LLSSDHINDY ENNNDNTSMF LEDNNLYGAW EPLWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-43	53	159	10	116	LOB family transfactor Ramosa2.1
5ly0_B	1e-43	53	159	10	116	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc05g048740.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC212792	2e-11	Solanum lycopersicum DNA sequence from clone LE_HBa-224N6 on chromosome 12, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004240278.1	1e-159	LOB domain-containing protein 1-like
Swissprot	Q9LQR0	5e-72	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A3Q7GHV2	1e-158	A0A3Q7GHV2_SOLLC; Uncharacterized protein
STRING	Solyc05g048740.2.1	1e-158	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	5e-72	LOB domain-containing protein 1

Link Out ? help Back to Top
Phytozome	Solyc05g048740.2.1
Entrez Gene	101249086

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]