PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g026180.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 494aa    MW: 55358.5 Da    PI: 6.8671
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g026180.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.42.5e-35481911128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 
                         lp+G++F+Ptd+el+ e+L++kv +k+      ++++   i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+      
  Solyc05g026180.1.1  48 LPAGVKFDPTDQELI-EHLEAKVVAKEskshplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtecq 136
                         799************.99****999885665443333333666646**********.555666799******************7565555 PP

                 NAM  78 ...tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              + +W++tgk+++v++ +g++ g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Solyc05g026180.1.1 137 dlqGGETRWHKTGKTRPVMV-NGKQRGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 191
                         54433778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-3944210IPR003441NAC domain
PROSITE profilePS5100533.49648210IPR003441NAC domain
PfamPF023657.4E-1649191IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MNKSSHQLGS ISSSDLIDAK LEEHQLCGSK QCPGCGHKLE GKPDWVGLPA GVKFDPTDQE  60
LIEHLEAKVV AKESKSHPLI DEFIPTIEGE DGICYTHPEK LPGVTRDGLS RHFFHRPSKA  120
YTTGTRKRRK IQTECQDLQG GETRWHKTGK TRPVMVNGKQ RGCKKILVLY TNFGKNRKPE  180
KTNWVMHQYH LGQHEEEKEG ELVVSKIFYQ TQPRQCNWSN TTSSAAGDQA NSDVNSRRDS  240
GSGSCSSSKD INNSNNIPSS HRDELSAAVC AAMSSYSTMD IQQYKPEHFS FLPFRKTFDH  300
DQAGIHVVGE GSMTREGGPT AAAPEERDMG EPHDAQHQHQ HQHQHQHQHH LVANSAFHIS  360
RPTPPISAII TPPPLHNTSV ILGEDAFHVP RSIILPNDNF QTIHDDKYDY VLIECIIFRQ  420
QQQHHKLGAR SASELEQLIM GCTSTDIKGD KEYPIACMGF SSQKESSITN SQDADWLKYS  480
HFWPDPDNPD HHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-124619113140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g026180.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010321135.10.0NAC domain-containing protein 75 isoform X1
RefseqXP_010321136.10.0NAC domain-containing protein 75 isoform X1
RefseqXP_025886968.10.0NAC domain-containing protein 75 isoform X1
SwissprotQ9M0F81e-177NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A3Q7GJL50.0A0A3Q7GJL5_SOLLC; Uncharacterized protein
STRINGSolyc05g026180.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40572444
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-145NAC domain containing protein 75
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]