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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g024010.2.1 | ||||||||
Common Name | LOC101254090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | CO-like | ||||||||
Protein Properties | Length: 453aa MW: 49702.8 Da PI: 7.1669 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20 | 1.4e-06 | 6 | 39 | 3 | 36 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg 36 r C+ ++++ + l+C+ + lC C + H+ Solyc05g024010.2.1 6 SRPCDFCNQQIAVLYCRADTAKLCLFCDQLVHSA 39 678**************************99954 PP | |||||||
2 | zf-B_box | 24.8 | 4.6e-08 | 49 | 93 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C++++++++++ C +++ lC++C H + H+++p Solyc05g024010.2.1 49 SQICDNCGSEPVSIRCDTDKLVLCQECDWDAHGScavsgaHDRSP 93 579*************************99994488888888776 PP | |||||||
3 | CCT | 64.2 | 4e-22 | 404 | 447 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++ Solyc05g024010.2.1 404 RGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAN 447 7789**************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.0E-10 | 4 | 51 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.456 | 4 | 51 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.51E-7 | 7 | 39 | No hit | No description |
PROSITE profile | PS50119 | 9.712 | 47 | 94 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 7.9E-6 | 50 | 93 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.63E-7 | 51 | 94 | No hit | No description |
SMART | SM00336 | 0.74 | 52 | 94 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 1.7E-16 | 404 | 446 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 14.912 | 404 | 446 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MSPGESRPCD FCNQQIAVLY CRADTAKLCL FCDQLVHSAN ALSKKHLRSQ ICDNCGSEPV 60 SIRCDTDKLV LCQECDWDAH GSCAVSGAHD RSPVEGFSGC PSASDLASAW GLDIESKKLH 120 QQHTVLEYPS WMSKDAPPSS VLLQDLMVPS AINSAIYSTK QTPTCGKQKQ VIFKQLIELF 180 KRDLADGVGA GAEDLVPKTP NATSDWQGNI NVSIMDGVTQ KPQQQQPQNV PFTSSIMPHN 240 PKDSDQMVER NILWRGNSFD QNTQIWDFNL GQLRSHEQSS SLEADYSESD MACMMKSYGE 300 LIKGTSLATS KVLGLSGINC SVVHDDMTAF SNNSNNRAAS QGPATSESNN LPRIKTSSDL 360 GCVKPKCGGV STDLNFMDQS IVVGGDNTGE ETLKADMELL AKNRGNAMQR YKEKKKTRRY 420 DKHIRYESRK ARADTRKRVK GRFVKANESP DG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.16616 | 0.0 | fruit| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g024010.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004239301.1 | 0.0 | zinc finger protein CONSTANS-LIKE 14-like | ||||
TrEMBL | A0A3Q7GKA9 | 0.0 | A0A3Q7GKA9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g024010.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6703 | 21 | 26 | Representative plant | OGRP5453 | 8 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33500.1 | 1e-100 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g024010.2.1 |
Entrez Gene | 101254090 |
Publications ? help Back to Top | |||
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