PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g018350.2.1 | ||||||||
Common Name | LOC101267606 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Trihelix | ||||||||
Protein Properties | Length: 354aa MW: 40716.5 Da PI: 4.4406 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 40.8 | 5.9e-13 | 111 | 196 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++e +L+e+ e+ +l+r++l++ +W ev++k+ + g+ ++ ++C++ ++ l+k+ykk+ + ++k + +s++ +f++++ Solyc05g018350.2.1 111 WSEEESFVLLEVWGERYLELGRRSLRAEDWGEVAEKVtEMVGVDKTEVECRNQLDVLKKKYKKEITKMEKTGGGFHSKWTFFKKMD 196 *************************************5567**********************99999988899999********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 7.0E-19 | 110 | 198 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MNDSDDETPY SSRPNAAIYN TSSLRSRRSI RNPTSYLRNT HYEYNNEFQY NHHGGAAAAH 60 DDDESDDEEA NQEFSSGEND VDNFQGKKKR KLETLVSNYN FAPRSGSKDI WSEEESFVLL 120 EVWGERYLEL GRRSLRAEDW GEVAEKVTEM VGVDKTEVEC RNQLDVLKKK YKKEITKMEK 180 TGGGFHSKWT FFKKMDMLMN LRMKGHCGLG CGLDSGEYVF MDPRMYLDRS NVLDEMRDSP 240 AGSDADNDEE EDEQGSGGWE GDDASAKLLA DSIQRFGQIY EKIENSKRKQ MMELEKMRRD 300 FQRELELQKK QIIERAQVEI AKIRGNGEND DDEDNEDEDG EETDNISGEK LRG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 86 | 91 | KKKRKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.15696 | 0.0 | fruit| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g018350.2.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004239274.1 | 0.0 | trihelix transcription factor ASIL2 isoform X1 | ||||
TrEMBL | A0A0V0I9M6 | 0.0 | A0A0V0I9M6_SOLCH; Putative trihelix transcription factor ASIL2-like | ||||
STRING | Solyc05g018350.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12060 | 20 | 22 | Representative plant | OGRP487 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24490.1 | 4e-76 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g018350.2.1 |
Entrez Gene | 101267606 |
Publications ? help Back to Top | |||
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