PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g015650.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | CAMTA | ||||||||
Protein Properties | Length: 936aa MW: 105304 Da PI: 6.2464 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 173.4 | 3.2e-54 | 13 | 127 | 3 | 116 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 +e + rwlk+ e++ iL n+e+h+l++e+ ++p+sgsl+Lyn++++r+frkDG+sw+kkkdg+tv E+he+LKvg+ e+l+cyYah+e+np Solyc05g015650.2.1 13 REaQIRWLKPAEVLFILRNHENHQLSSEPSQKPPSGSLFLYNKRVLRFFRKDGHSWRKKKDGRTVGEAHERLKVGNAEALNCYYAHGEQNP 103 55589************************************************************************************** PP CG-1 93 tfqrrcywlLeeelekivlvhyle 116 +fqrr+yw+L+ ++++ivlvhy++ Solyc05g015650.2.1 104 NFQRRSYWMLDPAYDHIVLVHYRD 127 **********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 80.407 | 8 | 134 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.8E-75 | 11 | 129 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 8.4E-48 | 14 | 127 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 1.3E-8 | 392 | 479 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 1.13E-18 | 395 | 479 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 2.4E-9 | 395 | 478 | IPR002909 | IPT domain |
CDD | cd00102 | 0.00102 | 395 | 479 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 4.7E-12 | 578 | 681 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 14.053 | 594 | 659 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 2.49E-11 | 596 | 681 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.07E-9 | 599 | 685 | No hit | No description |
SMART | SM00248 | 0.0038 | 627 | 656 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.06 | 627 | 659 | IPR002110 | Ankyrin repeat |
Pfam | PF13637 | 9.6E-5 | 629 | 681 | No hit | No description |
SMART | SM00015 | 15 | 729 | 751 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.492 | 730 | 759 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 1.78E-5 | 780 | 836 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 4.3 | 788 | 810 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.529 | 789 | 818 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.014 | 791 | 809 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0056 | 811 | 833 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.791 | 813 | 837 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 5.8E-5 | 814 | 833 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001077 | Molecular Function | transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 936 aa Download sequence Send to blast |
MAESGYDIND LVREAQIRWL KPAEVLFILR NHENHQLSSE PSQKPPSGSL FLYNKRVLRF 60 FRKDGHSWRK KKDGRTVGEA HERLKVGNAE ALNCYYAHGE QNPNFQRRSY WMLDPAYDHI 120 VLVHYRDIIE GRQNPAFMSE SSPISSAFSP SPSSYSTPHT GSTGIASECY EQYQNQSSPG 180 EICSDAIINN NGTTDTIGRT EEVISSPGLE MCQALRRLEE QLSLNDDSLK EIDPLYGDAI 240 NDDSSLIQMQ GNSNRLLLQH HSGESSESHH RDLTQDAHVW KDMLDHYGVS AAAESQTKYL 300 HKLDENAMLQ TLSERRAIEA YESYKWRDFS DKETQTAPVQ AFKQLEDFKY PTYPPDITTF 360 GSNPDEYTTI FDQDQIGTSL EDEMSLTIAQ KQKFTIRHIS PDWGYSSEPT KIVIIGSFLC 420 NPSECTWTCM FGDIEVPIQI IQEGVICCQA PRHLPGKVTL CVTSGNRESC SEVREFEYRV 480 KPDDCARNNQ PDVEGAYRST DELLLLVRFV QLLLSDLSVQ KRESSELGND LLEKSKASED 540 SWSQIIESLL FGTSVPMVTI DWLLQELLKD KFQQWLCSKL QQKDNQIDCS LSKKEQGIIH 600 MVAGLGFEWA LHPILNAGVS ANFRDINGWT ALHWAARFGR EKMVASLIAS GASAGAVTDP 660 SSRDPVGKTA ASIVALTSHL SSLTLEESEL SKGTADVEAE RTISSISNTS ATINEDQRSL 720 KDTLAAVRNA AQAAARIQSA FRAHSFRKRQ QREFGVSATT SVDEYGILSN DIQGLSAASK 780 LAFRNPREYN SAALAIQKKY RGWKGRKDFL AFRQKVVKIQ AHVRGYQVRK QYKVCWAVGI 840 LEKVVLRWRR RGVGLRGFRH DTESIDEIED EDILKVFRKQ KVDAALDEAV SRVLSMVESP 900 GARQQYHRIL EKYRQSKAEL EGADSETAST AHGHV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.16862 | 0.0 | fruit| leaf| root| trichome |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g015650.2.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN566048 | 0.0 | Solanum lycopersicum calmodulin-binding transcription factor SR2L mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001266135.2 | 0.0 | calmodulin-binding transcription factor SR2L | ||||
Swissprot | Q9FYG2 | 0.0 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | A0A3Q7GGC9 | 0.0 | A0A3Q7GGC9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g015650.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3932 | 20 | 37 | Representative plant | OGRP562 | 15 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g015650.2.1 |
Publications ? help Back to Top | |||
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