PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

SBP

Protein Properties

Length: 464aa MW: 50418.9 Da PI: 8.7182

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc05g015510.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.7	8.9e-40	177	253	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ dls+akey+r+h+vC+ hsk+p+v+v+g+ +rfCqqCsrfh++sefD++krsCrrrL++hn+rrrk+++ Solyc05g015510.2.1 177 CQVEGCNLDLSSAKEYYRKHRVCDSHSKSPKVIVAGVARRFCQQCSRFHSVSEFDDKKRSCRRRLSDHNARRRKPHQ 253 **************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.2E-32	170	238	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.53	174	251	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.09E-37	175	256	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.4E-31	177	250	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0048653	Biological Process	anther development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MEWNVKWDWG NLVMFGSKAS ESPKELQLTD WGVEEEGELD GGSFNLSSGG SGTGGYGSDL 60 KCGSSIKSSI SASTDSSPKD GFKVSNFAFE TFNASPEDPS KKLESSKAEV SRNSPPMEAS 120 VGSVEPVIGL KIGKRTCETF GGGSSAKVSS FPPNPASSAA ATKKAKSSTQ NAPIPHCQVE 180 GCNLDLSSAK EYYRKHRVCD SHSKSPKVIV AGVARRFCQQ CSRFHSVSEF DDKKRSCRRR 240 LSDHNARRRK PHQETIQFNS ARLSSLFYDS RQPMNLVLNE AQLIHSRAAA NATWESTQDS 300 KFSITREFTP KPERTGSTNG KSLLERNQFS RAVGAHSNAS SLLLPSKGTT AEVFNRGAKE 360 SMFNMVTGPE FPRALSLLST NSWGSSEPES VSLNHANQTS MPEQMMQAIP PHMSSQYWQA 420 GQHSSDPRYH TLAAANSNSG GSFQEMGVFK APFDTDFYLN ALN*

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MEWNVKWDWG NLVMFGSKAS ESPKELQLTD WGVEEEGELD GGSFNLSSGG SGTGGYGSDL  60
KCGSSIKSSI SASTDSSPKD GFKVSNFAFE TFNASPEDPS KKLESSKAEV SRNSPPMEAS  120
VGSVEPVIGL KIGKRTCETF GGGSSAKVSS FPPNPASSAA ATKKAKSSTQ NAPIPHCQVE  180
GCNLDLSSAK EYYRKHRVCD SHSKSPKVIV AGVARRFCQQ CSRFHSVSEF DDKKRSCRRR  240
LSDHNARRRK PHQETIQFNS ARLSSLFYDS RQPMNLVLNE AQLIHSRAAA NATWESTQDS  300
KFSITREFTP KPERTGSTNG KSLLERNQFS RAVGAHSNAS SLLLPSKGTT AEVFNRGAKE  360
SMFNMVTGPE FPRALSLLST NSWGSSEPES VSLNHANQTS MPEQMMQAIP PHMSSQYWQA  420
GQHSSDPRYH TLAAANSNSG GSFQEMGVFK APFDTDFYLN ALN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-25	177	250	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	232	249	KKRSCRRRLSDHNARRRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.7984	0.0	flower\| fruit

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc05g015510.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004239217.1	0.0	squamosa promoter-binding-like protein 12
Refseq	XP_010321004.1	0.0	squamosa promoter-binding-like protein 12
Refseq	XP_010321005.1	0.0	squamosa promoter-binding-like protein 12
Refseq	XP_010321006.1	0.0	squamosa promoter-binding-like protein 12
Refseq	XP_010321008.1	0.0	squamosa promoter-binding-like protein 12
TrEMBL	A0A3Q7GGA1	0.0	A0A3Q7GGA1_SOLLC; Uncharacterized protein
STRING	Solyc05g015510.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4129	24	44
Representative plant	OGRP97	17	230

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	1e-62	squamosa promoter binding protein-like 2

Link Out ? help Back to Top
Phytozome	Solyc05g015510.2.1
Entrez Gene	101246055

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]