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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g014930.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | FAR1 | ||||||||
Protein Properties | Length: 94aa MW: 10719.7 Da PI: 4.8609 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 28.7 | 4.3e-09 | 54 | 92 | 2 | 41 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkr 41 Yn+YA GF vrks+++++ n+e+t+r f Cs+egk+ Solyc05g014930.1.1 54 AYNSYALAKGFGVRKSAKTYN-INKEVTRRLFLCSCEGKS 92 5***************99998.8999************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.8E-6 | 54 | 92 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
MEETHIDKGS SLQEDSNVND NEYSTKANNV YSINKNFSFE IDMKFNFEEE SYNAYNSYAL 60 AKGFGVRKSA KTYNINKEVT RRLFLCSCEG KSD* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.23838 | 1e-106 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g014930.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019266793.1 | 3e-26 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | K4BYL1 | 2e-60 | K4BYL1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g014930.1.1 | 3e-61 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1726 | 9 | 31 |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g014930.1.1 |
Publications ? help Back to Top | |||
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