PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g013540.1.1
Common NameLOC101246247
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 387aa    MW: 42534 Da    PI: 7.8104
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g013540.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-175099255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  Solyc05g013540.1.1 50 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 99
                        69*******.**********93....35999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.8E-2950106IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-2150107IPR016177DNA-binding domain
SMARTSM003804.1E-3350113IPR001471AP2/ERF domain
PfamPF008479.5E-115099IPR001471AP2/ERF domain
PROSITE profilePS5103222.08950107IPR001471AP2/ERF domain
CDDcd000185.40E-3050106No hitNo description
PRINTSPR003672.2E-95162IPR001471AP2/ERF domain
PRINTSPR003672.2E-97389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MEDAMRRLNQ ETDVPLQNTT NSSTVNKTRS SCSSNKRSLK DTATGPSAVR YRGVRRRPWG  60
RYAAEIRDPQ SKERRWLGTF DTAEEAACAY DCAARAMRGV KARTNFVYPP CPTPTQPTST  120
NDALFNIHSS YKLTSPYYHQ SSNTLKDLSN RPFFHSSSPY GSTGRAHVIG QKSNDSLNML  180
LFRELLSSNS SNNTNNLNVT SSMNMPNLYE QLPNFTMNRN TNSFGSYLPN SSNPVIPSSS  240
VMTTQVPKFD NTVHCTINNN NSSSGATAND DSAAGMDFFP SESSDSGLLE EALNGFFPKP  300
KPIKSVPSSL PNYEFCNIFS QQPQQQEQIN NGGLNSDFGL LSSSLSSFPV DYFPGNLQVA  360
PGDNIMGDIF QYPDLLSIFA AKLQNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1943106771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g013540.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239483.20.0ethylene-responsive transcription factor ESR1-like
TrEMBLA0A3Q7H8Y90.0A0A3Q7H8Y9_SOLLC; Uncharacterized protein
STRINGSolyc05g013540.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.12e-13ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]