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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc05g009790.1.1 |
| Common Name | SlRAV2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
RAV |
| Protein Properties |
Length: 396aa MW: 44382.3 Da PI: 9.8647 |
| Description |
RAV family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc05g009790.1.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 42.8 | 1.3e-13 | 71 | 119 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g
Solyc05g009790.1.1 71 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEENEAARAYDIAAQRFRG 119
78****9888.8*********3.....5*************************98 PP
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| 2 | B3 | 105 | 4e-33 | 207 | 304 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
f+kv tpsdv+k++rlv+pk++ae+h +g++ +++ l +ed++g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++ +
Solyc05g009790.1.1 207 FEKVVTPSDVGKLNRLVIPKQHAEKHfplqNGNNSKGVLLNFEDLNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTS 297
99****************************778889***************************************************8766 PP
SEE..EE CS
B3 88 sefelvv 94
+++l++
Solyc05g009790.1.1 298 GDKQLYI 304
6666666 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0048573 | Biological Process | photoperiodism, flowering |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 396 aa
Download sequence Send
to blast |
MEGSISSIDQ ESTTSDSLSI APAASSSTMI KSSTTIKLPP ESGLCRMGSG TSVIIDAENG 60
VEAESRKLPS SRYKGVVPQP NGRWGAQIYE KHQRVWLGTF NEENEAARAY DIAAQRFRGR 120
DAVTNFKPLL ENQESDDMEI AFLNSHSKAE IVDMLRKHTY IDELEQSKRL FGFTKDGMIK 180
RKDGLVISSF FGSTNDKVNC KAREQLFEKV VTPSDVGKLN RLVIPKQHAE KHFPLQNGNN 240
SKGVLLNFED LNGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKNLKAGDIV SFQRSTSGDK 300
QLYIDFKAKN VGNTSMVVTN QVQAQVQVPL VQMVRLFGVN ICKVPANVSN VVIDNNNNNN 360
NNNMTSWGGG KRRMEMELLT FESCRKKQRV IIDAL*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:18718758}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
| Function -- GeneRIF ? help
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- SlERFs may act as intermediate transcription factors between AtCBF1 and pathogenesis-related (PR) genes via SlRAV in tomato, which results in enhanced tolerance to bacterial wilt. [SlRAV2]
[PMID: 21398258]
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| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU164417 | 0.0 | Solanum lycopersicum RAV2 gene, promoter region and complete cds |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Li CW, et al.
Tomato RAV transcription factor is a pivotal modulator involved in the AP2/EREBP-mediated defense pathway.
Plant Physiol., 2011. 156(1): p. 213-27
[PMID:21398258] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Choi D, et al.
iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
Mol Plant, 2014. 7(5): p. 792-813
[PMID:24380880] - Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
TEMPRANILLO is a regulator of juvenility in plants.
Sci Rep, 2014. 4: p. 3704
[PMID:24424565] - Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
RAV genes: regulation of floral induction and beyond.
Ann. Bot., 2014. 114(7): p. 1459-70
[PMID:24812253] - Marín-González E, et al.
SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
Plant Physiol., 2015. 169(2): p. 1214-24
[PMID:26243615] - Matías-Hernández L, et al.
TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
Plant Physiol., 2016. 170(3): p. 1624-39
[PMID:26802039]
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