PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 485aa MW: 53297.6 Da PI: 6.578

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc05g009660.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.8	1.3e-09	196	237	5	46
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k rr+++NReAAr+sR+RKka++++Le+ +L++ ++Lk Solyc05g009660.2.1 196 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLSQLEQELK 237 7789*************************9888888887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.8E-7	190	239	No hit	No description
SMART	SM00338	6.3E-7	192	257	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.507	194	238	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.2E-6	196	237	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.61E-6	196	238	No hit	No description
CDD	cd14708	2.72E-21	196	247	No hit	No description
PROSITE pattern	PS00036	0	199	214	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.2E-30	281	354	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MQAFKEAAVI NNNNNSNSNS NSSMYCHSSY YLRGDEDSRL AARFADIGEL EQSTGFTQDD 60 AVDLSRSTVY GEMRPNNVGI VSCNNNNLHF GELNTSIGSS ETGVETGRFM LQKAQTGMVG 120 GGGGGGGVVG GGVALGNVQH FENWGDSGIA DHSQQTDTST DVDTDERNHQ GQGVQHGALI 180 AVDSMDLSKV KLGDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLS QLEQELKRAR 240 QQGIFIANGY AGDQSLSAGG NGALAFDMDY ARWLDEHQRL ISDLRSAVNS HRGDNELRHL 300 VDGVMSHYDE KFKLKSVGLK ADVFHMLSGM WKTPVERCFM WLGGFRSSEL LKILGNHLEP 360 FTEQQLIGIC NLQQSSQQAE DALSQGMEAL QQLLIDTLSS TSLGPSGSGN VADYMGQMAI 420 AMNQLATLEN FLYQADLLRQ RTLQQLHRIL TTRQAARALL VISDYMSRLR ALSSLWLARP 480 KDQL*

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MQAFKEAAVI NNNNNSNSNS NSSMYCHSSY YLRGDEDSRL AARFADIGEL EQSTGFTQDD  60
AVDLSRSTVY GEMRPNNVGI VSCNNNNLHF GELNTSIGSS ETGVETGRFM LQKAQTGMVG  120
GGGGGGGVVG GGVALGNVQH FENWGDSGIA DHSQQTDTST DVDTDERNHQ GQGVQHGALI  180
AVDSMDLSKV KLGDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLS QLEQELKRAR  240
QQGIFIANGY AGDQSLSAGG NGALAFDMDY ARWLDEHQRL ISDLRSAVNS HRGDNELRHL  300
VDGVMSHYDE KFKLKSVGLK ADVFHMLSGM WKTPVERCFM WLGGFRSSEL LKILGNHLEP  360
FTEQQLIGIC NLQQSSQQAE DALSQGMEAL QQLLIDTLSS TSLGPSGSGN VADYMGQMAI  420
AMNQLATLEN FLYQADLLRQ RTLQQLHRIL TTRQAARALL VISDYMSRLR ALSSLWLARP  480
KDQL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.14053	1e-139	callus\| flower\| fruit\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc05g009660.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004239421.1	0.0	transcription factor TGA2.3-like
Swissprot	Q41558	1e-176	HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBL	M1AZL1	0.0	M1AZL1_SOLTU; Uncharacterized protein
STRING	Solyc05g009660.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA820	23	85
Representative plant	OGRP722	16	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-132	bZIP family protein

Link Out ? help Back to Top
Phytozome	Solyc05g009660.2.1
Entrez Gene	101247526

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]