PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g009640.2.1
Common NameLOC101260934
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 235aa    MW: 26587.5 Da    PI: 8.2706
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g009640.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.22.2e-1183127554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h  +Er+RR+ri + f  L +l+P +      K++Ka+iLe A   I++L
  Solyc05g009640.2.1  83 HLLAERKRRKRISKLFVSLASLIPGL-----NKMDKASILEGAATLIRQL 127
                         7789*********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-1376135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.41878127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-1282137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-883127No hitNo description
PfamPF000103.8E-983127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-1184133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDDLALIFSH HNNGESSRKQ LHKEKEDEKA NSLACIISFN NNFENSLSIP KDEANNTISF  60
SNINNIIGAK FGERRSGEQA LEHLLAERKR RKRISKLFVS LASLIPGLNK MDKASILEGA  120
ATLIRQLGER AKEDDHHQST IGMMTKNNLL PEVEIKSLEK ELLITILLYK NQQKRNIDEI  180
LSVIQRLHLT IKTTNFMPFG TTSMHITVIA QMNDEFCETT DFLAEKLRSL ISKV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.243170.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g009640.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238949.21e-170transcription factor bHLH18
TrEMBLM1AZM01e-130M1AZM0_SOLTU; Uncharacterized protein
STRINGSolyc05g009640.2.11e-169(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14501910
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.24e-24bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]