PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g009320.2.1 | ||||||||
Common Name | LOC101254088 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | LBD | ||||||||
Protein Properties | Length: 255aa MW: 28068.7 Da PI: 6.273 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92 | 7e-29 | 4 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C+++C l+p + p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +Pv+G+vg++ ++++q Solyc05g009320.2.1 4 SCNGCRVLRKGCSENCSLRPSLqwiksPDSQANATVFLAKFYGRAGLINLINAGPQHLRPAIFRSLLYEACGRIINPVNGSVGLMCSGNWQ 94 6****************************************************************************************** PP DUF260 87 leqlkaelallk 98 +q ++e +l + Solyc05g009320.2.1 95 RCQDAVESVLKG 106 ***999988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.284 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.3E-23 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSENCS LRPSLQWIKS PDSQANATVF LAKFYGRAGL INLINAGPQH 60 LRPAIFRSLL YEACGRIINP VNGSVGLMCS GNWQRCQDAV ESVLKGSTIM QVPINSDDDN 120 NSTDQIVPLK GCDIRHVSKY NSTNSDNQQV KTRNGRLKRK GSTFDSAASA SVEVEAAEEY 180 LLKNQPPLKF SITGWDQFEE REDEMIKRSQ SHDSFSVETV EPTLLVNRVD PVKLEEDGDL 240 LGLDLTLGLM SPTG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.8161 | 0.0 | callus| leaf| root| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g009320.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC226516 | 1e-06 | Solanum lycopersicum chromosome 2 clone C02SLe0053H21, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004238927.1 | 0.0 | LOB domain-containing protein 42 | ||||
Swissprot | Q9M886 | 1e-70 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A3Q7GEH2 | 0.0 | A0A3Q7GEH2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g009320.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA886 | 24 | 94 | Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 3e-71 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g009320.2.1 |
Entrez Gene | 101254088 |
Publications ? help Back to Top | |||
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