PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g009170.1.1
Common NameLOC101250797
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 213aa    MW: 22848.3 Da    PI: 7.6923
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g009170.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.7e-055476123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C++C++ F ++  L  H++ H
  Solyc05g009170.1.1 54 YECQYCSREFANSQALGGHQNAH 76
                        99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.19E-65181No hitNo description
Gene3DG3DSA:3.30.160.601.2E-45280IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.1755481IPR007087Zinc finger, C2H2
PfamPF139129.6E-65478IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MAELEYLAGS NTNRRLKLFG FNVIEDQEQE VESTKTSSGS PESGDFPAID GRKYECQYCS  60
REFANSQALG GHQNAHKKER QQLKRAQIQA SRNAYMRNPI ISAFAPPSHL LTPPGTVVYP  120
AGSTPSWVYV PRAPPSFHVS HGGRGVANFH YTGGIAEPNL TSVGPQHVKA HSGRVDGSNG  180
PSLSSFSRPD FGPNCDDPFG LDLHLSLAPA GS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.234350.0fruit| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin and cytokinin. Acts upstream of GIS, GIS2, ZFP8, and the trichome initiation factors GL1 and GL3. Binds the promoter region of GIS and GIS2, which may be direct targets of GIS3. {ECO:0000269|PubMed:25640859}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g009170.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2251191e-111Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05HBa0207N23, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238916.11e-157zinc finger protein GIS3
SwissprotQ9C9H14e-56GIS3_ARATH; Zinc finger protein GIS3
TrEMBLA0A3Q7GED81e-156A0A3Q7GED8_SOLLC; Uncharacterized protein
STRINGSolyc05g009170.1.11e-157(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29941419
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.12e-15zinc finger protein 5
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Sun L, et al.
    GLABROUS INFLORESCENCE STEMS3 (GIS3) regulates trichome initiation and development in Arabidopsis.
    New Phytol., 2015. 206(1): p. 220-30
    [PMID:25640859]