PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g008670.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C3H | ||||||||
Protein Properties | Length: 299aa MW: 33690 Da PI: 8.5838 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 48 | 2e-15 | 217 | 242 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tG C+yG++C+FaHg Solyc05g008670.2.1 217 FKTELCNKWQETGACPYGENCQFAHG 242 79***********************8 PP | |||||||
2 | zf-CCCH | 17.6 | 7e-06 | 255 | 280 | 1 | 26 |
--S---SGGGGTS.--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHg 26 ykte Cr + G C+yG rC+F H+ Solyc05g008670.2.1 255 YKTEVCRMVLN-GdPCPYGHRCHFRHS 280 9******9999.55**********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-19 | 211 | 249 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-11 | 213 | 248 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.446 | 216 | 244 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.6E-9 | 216 | 243 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-12 | 217 | 242 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-11 | 250 | 283 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-8 | 250 | 284 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.488 | 254 | 282 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-5 | 254 | 281 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0061158 | Biological Process | 3'-UTR-mediated mRNA destabilization | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003730 | Molecular Function | mRNA 3'-UTR binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MLFPPAGLLL DDSQPSTETT VTPVLTPRFR QNHSSQLLID QHYQQDLMDR HNRVLSQLLE 60 TEKKTLALRQ ENINLKMVNF NLNNRLSLLL KASSDYGPSS SLGLDNGLRR MHVGVGHEEE 120 TSSDGHSWED VVADRHLSPT SVMDSGRADG VDRVLLPKSI SVRSNGYLKT NHAAGGSRPH 180 NRTKSSSVNT AQRVYVKGGS KKEEEPLELD VYNQGMFKTE LCNKWQETGA CPYGENCQFA 240 HGIEELRPVL RHPRYKTEVC RMVLNGDPCP YGHRCHFRHS LTDKEKLMRS LNSKMRSN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 1e-22 | 217 | 280 | 4 | 67 | Butyrate response factor 2 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00383 | ampDAP | Transfer from AT1G68200 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g008670.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC212304 | 0.0 | Solanum lycopersicum chromosome 05 clone C05HBa0309L13, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004238882.1 | 0.0 | zinc finger CCCH domain-containing protein 15-like | ||||
Swissprot | Q9C9F5 | 4e-66 | C3H15_ARATH; Zinc finger CCCH domain-containing protein 15 | ||||
TrEMBL | A0A3Q7GF01 | 0.0 | A0A3Q7GF01_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g008670.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9140 | 22 | 28 |
Representative plant | OGRP2058 | 16 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 3e-63 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g008670.2.1 |
Publications ? help Back to Top | |||
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