PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g006310.1.1 | ||||||||
Common Name | LOC101267308 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 251aa MW: 28394.1 Da PI: 8.7608 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00028 | 102 | 124 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F ++ L H++ H Solyc05g006310.1.1 102 FECQYCLKQFANSQALGGHQNAH 124 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.19E-5 | 100 | 129 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.7E-5 | 100 | 128 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.448 | 102 | 129 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.1E-5 | 102 | 126 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 104 | 124 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MAKDVVSSTF QSPSSNINGE NYHESSSKSC IENNNNNNKK LKIFGFELID NPKRSPKKVQ 60 NNSSKEDQES VNSSSASTVS SGNIHHNQEK ISSNHEEIMK KFECQYCLKQ FANSQALGGH 120 QNAHKKERMR KKRLQLQARK ASLSCYLQPF HNQNYNNNNN NIINYQFHDP QFNVYEESQI 180 SFNPNYDYQV SSEGGGTNWP FHQDSNNCTF TLTHGGNNYM KPPSTILDNS SSTKQKSSCK 240 HLDLQLGLSL * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.23462 | 0.0 | cell culture |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g006310.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004238719.1 | 0.0 | zinc finger protein 5 | ||||
TrEMBL | M1B9Q8 | 1e-137 | M1B9Q8_SOLTU; Uncharacterized protein | ||||
STRING | Solyc05g006310.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5136 | 21 | 30 | Representative plant | OGRP10209 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10480.1 | 7e-16 | zinc finger protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g006310.1.1 |
Entrez Gene | 101267308 |
Publications ? help Back to Top | |||
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