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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g082480.2.1 | ||||||||
Common Name | LOC101260431 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Nin-like | ||||||||
Protein Properties | Length: 913aa MW: 102468 Da PI: 5.6947 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 94.3 | 8.2e-30 | 588 | 639 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ Solyc04g082480.2.1 588 AEKTITLQVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 639 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.518 | 578 | 659 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.1E-25 | 591 | 639 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 2.23E-23 | 803 | 896 | No hit | No description |
PROSITE profile | PS51745 | 24.928 | 811 | 895 | IPR000270 | PB1 domain |
SMART | SM00666 | 9.2E-24 | 811 | 894 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 2.2E-21 | 812 | 890 | No hit | No description |
CDD | cd06407 | 2.37E-39 | 813 | 894 | No hit | No description |
Pfam | PF00564 | 1.8E-18 | 813 | 893 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 913 aa Download sequence Send to blast |
MDERVIPSNP LLTTPSDYLM DLDYMDGLFL EGCWLETTDG NEFLQHSPGI FNAPFDSSFM 60 WPTTIDANNV EFNGISSKDA QQEKQRPSLT ENLSINHCQE LNYAKVQSFG ENMNNAMCTS 120 SLSENHLVEA HELNKRWWIG PKASSSVMDR LIWALGYIRD CSRDKDILLQ LWVPINRDGR 180 RVLSTTNQPF LLDLNCPQLA NYREVSVNYQ FPANEDSKEI VGLPGRVFAD KVPEWTPDVR 240 FFRSEEYPRV EHAQQYDVRG TLAVPVFEQG SRNCLGVIEV VMTTQKIKYR SELESVCKAL 300 EAVDLSTSEV STTQDAKVCD LSYQAALPEV LEVLKSACET HGLPLAQTWV PCIQQGKGGC 360 RHSQENLIHC VSTEDSACYV ADPRVQGFHD ACSEHHLLKG QGVVGRAFNT NQPCFSADLT 420 SYSKSEYPLS HYAKMFGLQA AVAIRLRSIS TGSSDFVLEF FLPSDCRNPE DHRKMLTSLS 480 IIIQNVCRTL RVVTDKELQE ETISVGEMAN HTVEQHKEHT ETSQERTSWT SCDAEFQESS 540 VMSTFQDEKP DEMLRKDSVE FRHRKNSAYE EGVSRNLGKT GDRRRAKAEK TITLQVLQQY 600 FAGSLKDAAK SIGVCPTTLK RICRQHGIKR WPSRKIKKVG HSLQKIQRVI DSVQGASGTL 660 QIESFYSNFP ELASPNASRM SPFADSKSNE HPTALNTQQE RCITSPNPDA SKSPSSSSSR 720 SSSSSQCCSS GTKPQSPQSH PLSIVGDEDL IVQEESVDNA VKRVKSEPEL HLSSEALKTI 780 PRSQSHLCVA ENPISENLVL KRSPSTSQEE APRVKVTHGE EKIRFRMQNS WRYNDLLREI 840 TRRFGIDDPS GLQLKYLDDD SEWVLLTCDA DLEECIDVCM SSQIQMIKLI LVQDSQHHFG 900 SSFGSSSPIL VQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.8186 | 0.0 | callus| flower |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00154 | DAP | Transfer from AT1G20640 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g082480.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU326379 | 0.0 | S.lycopersicum DNA sequence from clone LE_HBa-68N5 on chromosome 4, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004238434.1 | 0.0 | protein NLP4 isoform X1 | ||||
Refseq | XP_010320461.1 | 0.0 | protein NLP4 isoform X1 | ||||
Refseq | XP_010320463.1 | 0.0 | protein NLP4 isoform X1 | ||||
Swissprot | Q9LE38 | 0.0 | NLP4_ARATH; Protein NLP4 | ||||
TrEMBL | A0A3Q7GB40 | 0.0 | A0A3Q7GB40_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g082480.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1598 | 24 | 67 | Representative plant | OGRP299 | 16 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76350.1 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g082480.2.1 |
Entrez Gene | 101260431 |
Publications ? help Back to Top | |||
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