PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g081370.2.1 | ||||||||
Common Name | LOC101261325 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 452aa MW: 49014.6 Da PI: 9.7313 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18 | 7.9e-06 | 203 | 225 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 CpdCg++F+ ++L++H+ + H Solyc04g081370.2.1 203 ACPDCGEVFPKIESLEHHQAVkH 225 6******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 202 | 225 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.725 | 202 | 230 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.90.228.10 | 3.1E-7 | 227 | 447 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
SuperFamily | SSF56399 | 2.01E-18 | 227 | 447 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MKKRTSSTIA LFFSHFLALF LMALLTFLPE TSEKNQPSKR RKKQQKQNKE KQKQPSSWDQ 60 FKNLLTCKQI ENSTVHDPAS KNPPPSAAAA APAGAYSKLS SCSSICSFRD VVHGNTRVVH 120 RADNSPESSS LGQETRLLSK NKTSHHDPSS SSSRSLARSN GNGSSTYTTS SRGMQFRKLS 180 GCYECHMIVD PSRYPLPRST ICACPDCGEV FPKIESLEHH QAVKHAVSEL GPEDSSRNIV 240 EIIFKSSWLK KDNPICKIER ILKVHNTKRT IQRFEDCRDA VKIHAVATGK KNPRCAADGN 300 ELLRFYCTSL TCVLGARGSS SLCGSVPGCG VCTTIRHGFQ GNKTSGVRTT ASSGRAHDCL 360 GSGMARRRAM IVCRVIAGRV KQNVGASPTK EEENCSGSGS GSGSGLSATG STIYNSVAGH 420 VGIYSNLEEL YVFNPRAILP CFVVIYEALE S* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.13601 | 0.0 | callus| flower| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g081370.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC193778 | 0.0 | Solanum lycopersicum chromosome 4 clone C04HBa0101P06, complete sequence | |||
GenBank | CU222538 | 0.0 | S.lycopersicum DNA sequence from clone LE_HBa-331L22 on chromosome 4, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004238353.1 | 0.0 | uncharacterized protein LOC101261325 | ||||
TrEMBL | K4BVL6 | 0.0 | K4BVL6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g081370.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5195 | 23 | 34 | Representative plant | OGRP661 | 14 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 1e-147 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g081370.2.1 |
Entrez Gene | 101261325 |
Publications ? help Back to Top | |||
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