PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g081170.2.1 | ||||||||
Common Name | BBR/BPC4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 324aa MW: 36181.1 Da PI: 10.1587 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 381 | 2e-116 | 1 | 323 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye...pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllal 84 mdd+g+r+ r+k+ + + ++ +s+k q+m+++aerda+i+ernlalsekkaa+aerdma lqrd+a+aern+a++erdn++++l Solyc04g081170.2.1 1 MDDSGNRDngRHKPpQGQwlmQHqPSMK-----QIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNAIMERDNAFATL 86 8999987777877732222222234444.....********************************************************** PP GAGA_bind 85 llvenslasalpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksek 173 +++e+s++ + q+++g+k++++ qq +++ p++++++++ re++++ea p+++ a+e + +++k rak+pk+ + +kk+ k Solyc04g081170.2.1 87 QYRETSMT-----AGQIVRGVKHMHHPQQhVHHqPHMGEPTYNPREMHMVEAIPVSQPAPEPAKPRRNK---RAKEPKAATGSKKTPKA-- 167 *****954.....4579***********9644469**********************988877766666...44555544443333322.. PP GAGA_bind 174 skkkvkkesader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCC 235 kkvk+e++d + +k ++k++dl+ln+v++De+t+PvPvCsCtG+lr CYkWGnGGWqS+CC Solyc04g081170.2.1 168 -SKKVKRETEDLNqttygkspewkgaqemvgasddlnrqlsvAKPDWKDQDLGLNQVAFDETTMPVPVCSCTGVLRPCYKWGNGGWQSSCC 257 .2223333333111345566789999***************************************************************** PP GAGA_bind 236 tttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 tt++S+yPLP+++++r+aRi+grKmS++af+klL++LaaeG+dlsnpvDLk+ WAkHGtn+++ti+ Solyc04g081170.2.1 258 TTNLSMYPLPAVPNKRHARIGGRKMSGSAFTKLLSRLAAEGHDLSNPVDLKNNWAKHGTNRYITIK 323 *****************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 5.6E-105 | 1 | 323 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 3.2E-163 | 1 | 323 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MDDSGNRDNG RHKPPQGQWL MQHQPSMKQI MAIMAERDAA IQERNLALSE KKAALAERDM 60 AILQRDSAIA ERNNAIMERD NAFATLQYRE TSMTAGQIVR GVKHMHHPQQ HVHHQPHMGE 120 PTYNPREMHM VEAIPVSQPA PEPAKPRRNK RAKEPKAATG SKKTPKASKK VKRETEDLNQ 180 TTYGKSPEWK GAQEMVGASD DLNRQLSVAK PDWKDQDLGL NQVAFDETTM PVPVCSCTGV 240 LRPCYKWGNG GWQSSCCTTN LSMYPLPAVP NKRHARIGGR KMSGSAFTKL LSRLAAEGHD 300 LSNPVDLKNN WAKHGTNRYI TIK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.5424 | 0.0 | callus| flower| fruit| leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00540 | DAP | Transfer from AT5G42520 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g081170.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ982308 | 0.0 | Solanum lycopersicum GAGA-binding transcriptional activator (BBR/BPC4) mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001266214.1 | 0.0 | GAGA-binding transcriptional activator | ||||
Refseq | XP_010320046.1 | 0.0 | GAGA-binding transcriptional activator isoform X1 | ||||
Refseq | XP_010320047.1 | 0.0 | GAGA-binding transcriptional activator isoform X1 | ||||
Refseq | XP_010320048.1 | 0.0 | GAGA-binding transcriptional activator isoform X1 | ||||
Refseq | XP_010320049.1 | 0.0 | GAGA-binding transcriptional activator isoform X1 | ||||
Refseq | XP_010320050.1 | 0.0 | GAGA-binding transcriptional activator isoform X1 | ||||
Refseq | XP_010320051.1 | 0.0 | GAGA-binding transcriptional activator isoform X1 | ||||
Refseq | XP_010320053.1 | 0.0 | GAGA-binding transcriptional activator isoform X1 | ||||
Refseq | XP_010320054.1 | 0.0 | GAGA-binding transcriptional activator isoform X1 | ||||
Refseq | XP_019068757.1 | 0.0 | GAGA-binding transcriptional activator isoform X1 | ||||
Refseq | XP_019068759.1 | 0.0 | GAGA-binding transcriptional activator isoform X1 | ||||
Swissprot | Q8L999 | 1e-138 | BPC6_ARATH; Protein BASIC PENTACYSTEINE6 | ||||
TrEMBL | H1ZN91 | 0.0 | H1ZN91_SOLLC; GAGA-binding transcriptional activator | ||||
STRING | Solyc04g081170.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5353 | 23 | 38 | Representative plant | OGRP2841 | 13 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.1 | 1e-123 | basic pentacysteine 6 |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g081170.2.1 |
Entrez Gene | 101055597 |
Publications ? help Back to Top | |||
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