PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g081170.2.1
Common NameBBR/BPC4
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family BBR-BPC
Protein Properties Length: 324aa    MW: 36181.1 Da    PI: 10.1587
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g081170.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3812e-11613231301
           GAGA_bind   1 mdddgsre..rnkg.yye...pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllal 84 
                         mdd+g+r+  r+k+ + +   ++ +s+k     q+m+++aerda+i+ernlalsekkaa+aerdma lqrd+a+aern+a++erdn++++l
  Solyc04g081170.2.1   1 MDDSGNRDngRHKPpQGQwlmQHqPSMK-----QIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNAIMERDNAFATL 86 
                         8999987777877732222222234444.....********************************************************** PP

           GAGA_bind  85 llvenslasalpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksek 173
                         +++e+s++     + q+++g+k++++ qq +++ p++++++++ re++++ea p+++ a+e  + +++k   rak+pk+ + +kk+ k   
  Solyc04g081170.2.1  87 QYRETSMT-----AGQIVRGVKHMHHPQQhVHHqPHMGEPTYNPREMHMVEAIPVSQPAPEPAKPRRNK---RAKEPKAATGSKKTPKA-- 167
                         *****954.....4579***********9644469**********************988877766666...44555544443333322.. PP

           GAGA_bind 174 skkkvkkesader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCC 235
                           kkvk+e++d +                             +k ++k++dl+ln+v++De+t+PvPvCsCtG+lr CYkWGnGGWqS+CC
  Solyc04g081170.2.1 168 -SKKVKRETEDLNqttygkspewkgaqemvgasddlnrqlsvAKPDWKDQDLGLNQVAFDETTMPVPVCSCTGVLRPCYKWGNGGWQSSCC 257
                         .2223333333111345566789999***************************************************************** PP

           GAGA_bind 236 tttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                         tt++S+yPLP+++++r+aRi+grKmS++af+klL++LaaeG+dlsnpvDLk+ WAkHGtn+++ti+
  Solyc04g081170.2.1 258 TTNLSMYPLPAVPNKRHARIGGRKMSGSAFTKLLSRLAAEGHDLSNPVDLKNNWAKHGTNRYITIK 323
                         *****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062175.6E-1051323IPR010409GAGA-binding transcriptional activator
SMARTSM012263.2E-1631323IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDDSGNRDNG RHKPPQGQWL MQHQPSMKQI MAIMAERDAA IQERNLALSE KKAALAERDM  60
AILQRDSAIA ERNNAIMERD NAFATLQYRE TSMTAGQIVR GVKHMHHPQQ HVHHQPHMGE  120
PTYNPREMHM VEAIPVSQPA PEPAKPRRNK RAKEPKAATG SKKTPKASKK VKRETEDLNQ  180
TTYGKSPEWK GAQEMVGASD DLNRQLSVAK PDWKDQDLGL NQVAFDETTM PVPVCSCTGV  240
LRPCYKWGNG GWQSSCCTTN LSMYPLPAVP NKRHARIGGR KMSGSAFTKL LSRLAAEGHD  300
LSNPVDLKNN WAKHGTNRYI TIK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.54240.0callus| flower| fruit| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g081170.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9823080.0Solanum lycopersicum GAGA-binding transcriptional activator (BBR/BPC4) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001266214.10.0GAGA-binding transcriptional activator
RefseqXP_010320046.10.0GAGA-binding transcriptional activator isoform X1
RefseqXP_010320047.10.0GAGA-binding transcriptional activator isoform X1
RefseqXP_010320048.10.0GAGA-binding transcriptional activator isoform X1
RefseqXP_010320049.10.0GAGA-binding transcriptional activator isoform X1
RefseqXP_010320050.10.0GAGA-binding transcriptional activator isoform X1
RefseqXP_010320051.10.0GAGA-binding transcriptional activator isoform X1
RefseqXP_010320053.10.0GAGA-binding transcriptional activator isoform X1
RefseqXP_010320054.10.0GAGA-binding transcriptional activator isoform X1
RefseqXP_019068757.10.0GAGA-binding transcriptional activator isoform X1
RefseqXP_019068759.10.0GAGA-binding transcriptional activator isoform X1
SwissprotQ8L9991e-138BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLH1ZN910.0H1ZN91_SOLLC; GAGA-binding transcriptional activator
STRINGSolyc04g081170.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53532338
Representative plantOGRP28411331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-123basic pentacysteine 6
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]