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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc04g081000.2.1 |
Common Name | def, LeAP3 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
MIKC_MADS |
Protein Properties |
Length: 229aa MW: 26478.2 Da PI: 9.7589 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc04g081000.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 90.6 | 8.1e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ien++nrqvt+skRrng++KKA+EL vLCda+v+++++sstgkl+e++s
Solyc04g081000.2.1 9 KKIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIVMISSTGKLHEFIS 59
68***********************************************86 PP
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2 | K-box | 93.4 | 3.8e-31 | 71 | 169 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91
yqk+ g++ +++++e++q++l+kLk+ ++nL++e+R+++Ge+L++L++++L++L +++++slk iR++K +++ +qie+ +kk ++++e+n
Solyc04g081000.2.1 71 YQKTIGVDIWTTHYEKMQEQLRKLKDVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKFKVIGNQIETYRKKVRNVEEIN 161
78888999*********************************************************************************** PP
K-box 92 kaLrkkle 99
++L +++
Solyc04g081000.2.1 162 RNLLLEFD 169
***87765 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 4.6E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.609 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.97E-38 | 2 | 80 | No hit | No description |
PRINTS | PR00404 | 1.5E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-35 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.0E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.4E-20 | 82 | 167 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.992 | 84 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010093 | Biological Process | specification of floral organ identity |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 229 aa
Download sequence Send
to blast |
MARGKIQIKK IENQTNRQVT YSKRRNGLFK KANELTVLCD AKVSIVMISS TGKLHEFISP 60 SITTKQLFDL YQKTIGVDIW TTHYEKMQEQ LRKLKDVNRN LRKEIRQRMG ESLNDLNYEQ 120 LEELMENVDN SLKLIRERKF KVIGNQIETY RKKVRNVEEI NRNLLLEFDA RQEDPYGGLV 180 EHDGDYNSVL GFPTGGPRIL DLRLQPNNNY HNHLHSGGGS DITTFALG*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in petals and stamens, less in carpels and sepals. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor involved in the genetic control of flower development. Necessary for the normal development of petals. Absence of the PMADS1 protein causes transformation of petals into sepals. |
Function -- GeneRIF ? help
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- A loss-of-function mutation in the Tomato AP3 gene (TAP3) results in homeotic transformations of both petals and stamens. [TAP3]
[PMID: 16844904] - TM6 and TAP3 play qualitatively different roles in floral development; A loss-of-function mutation in the Tomato AP3 gene (TAP3) results in homeotic transformations of both petals and stamens whereas RNA interference-induced reduction in TM6 function resulted in flowers with homeotic defects primarily in stamens. [TAP3]
[PMID: 16844904] - STAMENLESS is the tomato AP3 orthologue and that the mutant phenotype correlated to the SL silencing level. [STAMENLESS]
[PMID: 24659487]
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Publications
? help Back to Top |
- Immink RG, et al.
Analysis of the petunia MADS-box transcription factor family. Mol. Genet. Genomics, 2003. 268(5): p. 598-606 [PMID:12589434] - Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] - Pracros P,Renaudin J,Eveillard S,Mouras A,Hernould M
Tomato flower abnormalities induced by stolbur phytoplasma infection are associated with changes of expression of floral development genes. Mol. Plant Microbe Interact., 2006. 19(1): p. 62-8 [PMID:16404954] - de Martino G,Pan I,Emmanuel E,Levy A,Irish VF
Functional analyses of two tomato APETALA3 genes demonstrate diversification in their roles in regulating floral development. Plant Cell, 2006. 18(8): p. 1833-45 [PMID:16844904] - Quinet M, et al.
Transcriptional and hormonal regulation of petal and stamen development by STAMENLESS, the tomato (Solanum lycopersicum L.) orthologue to the B-class APETALA3 gene. J. Exp. Bot., 2014. 65(9): p. 2243-56 [PMID:24659487] - Kush A,Brunelle A,Shevell D,Chua NH
The cDNA sequence of two MADS box proteins in Petunia. Plant Physiol., 1993. 102(3): p. 1051-2 [PMID:8278527] - Kramer EM,Dorit RL,Irish VF
Molecular evolution of genes controlling petal and stamen development: duplication and divergence within the APETALA3 and PISTILLATA MADS-box gene lineages. Genetics, 1998. 149(2): p. 765-83 [PMID:9611190]
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