PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g080910.1.1
Common NameLOC101246344
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 249aa    MW: 27020.7 Da    PI: 4.548
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g080910.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.18e-173079255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         ykGVr++  +g+WvAeIr+p   + r +r +lg+f+  ++Aa  ++aa++kl+g
  Solyc04g080910.1.1 30 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDNSYDAAVVYDAAALKLYG 79
                        69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.41E-192989No hitNo description
SMARTSM003801.6E-323093IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-283088IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-193088IPR016177DNA-binding domain
PfamPF008474.8E-103079IPR001471AP2/ERF domain
PROSITE profilePS5103221.2723087IPR001471AP2/ERF domain
PRINTSPR003671.1E-73142IPR001471AP2/ERF domain
PRINTSPR003671.1E-75369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MSSNSKKLIP ATSRKGCMRG KGGPENANCT YKGVRQRTWG KWVAEIREPN RGARLWLGTF  60
DNSYDAAVVY DAAALKLYGA EAKLNLPHLY NNQAQAQAQI QNSKPITIMS PSLSPVSTTT  120
AQASSPSVTS VYNVASPSTW SVGSDDSSFY FNSHDFGIHN DIPSAFNLID INKTADDYSV  180
DNATNNNQSS EVLGGEMFRD LNMNLPEIDD SSIWEEAKAT TSFQEAVNDP GIGGYNLDDD  240
LNFPPWCG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-183187360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g080910.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238613.10.0dehydration-responsive element-binding protein 2D-like
TrEMBLA0A3Q7H3560.0A0A3Q7H356_SOLLC; Uncharacterized protein
STRINGSolyc04g080910.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.14e-39ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]