PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g080130.2.1
Common NameLOC101254481
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 502aa    MW: 54293 Da    PI: 8.1004
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g080130.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-054971123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C+k F r  nL+ H r H
  Solyc04g080130.2.1 49 FVCEICNKGFQRDQNLQLHRRGH 71
                        89*******************88 PP
2zf-C2H213.70.00018125147123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC+ C+k +  +s+ k H++t+
  Solyc04g080130.2.1 125 FKCERCTKKYAVHSDWKAHMKTC 147
                         89*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.13E-74871No hitNo description
Gene3DG3DSA:3.30.160.601.6E-54871IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9494971IPR007087Zinc finger, C2H2
PfamPF121718.0E-54971IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0174971IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
SMARTSM0035523090120IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4113146IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.13E-7120146No hitNo description
SMARTSM0035573125145IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MAEIEKSAEE SIIQQNFPVK RKRNLPGNPD PEAEVIALSP RTLMATNRFV CEICNKGFQR  60
DQNLQLHRRG HNLPWKLRQR TSNEVKKRVY VCPESSCVHH DPSRALGDLT GIKKHFCRKH  120
GEKKFKCERC TKKYAVHSDW KAHMKTCGTR EYRCDCGTLF SRRDSFITHR AFCDALAQES  180
ARSHQPLMED TNAEGDLKVD EAINKTVSSS SSPPPQPLTP STSVLSPVLS IQSSELPVEY  240
QNQGGVQIQQ AQGTTTPVST TPVITISTAA ASGPSSSKVF ASVFPSSSSA QHVNSSYSDI  300
LRAIETEQVM AVEPISLSLS SSLYLSNNRA SLFQEHTGGH GHGHGQHYGS ATMQPALSAT  360
ALLQKAAQMG STTSNNSFLR GLGLAMSPST STPEENSLAR RTNALGHVKL ESNINAEVPG  420
LGIQLHGHSG FTDLMMGPSI SHQTSMMFGS KPPTLDFLGL GNGASGTPSN GFSAFLSSME  480
DGFGVVAEPW DDPSDRKPAM L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-33121182364Zinc finger protein JACKDAW
5b3h_F8e-33121182364Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.22960.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g080130.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0134780.0Lycopersicon esculentum clone 132154R, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238241.10.0protein indeterminate-domain 2
SwissprotQ9SCQ61e-133IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A3Q7G9T00.0A0A3Q7G9T0_SOLLC; Uncharacterized protein
STRINGSolyc04g080130.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-112indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  3. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  4. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]