PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 253aa MW: 27917.9 Da PI: 8.7018

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g079360.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.8	6e-19	35	80	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd++l ++v+++G ++W++I++++ gR++k+c++rw + Solyc04g079360.1.1 35 KGPWSAEEDKILTKLVERYGARNWSLISKYIK-GRSGKSCRLRWCNQ 80 79***************************9.*********985 PP
2	Myb_DNA-binding	55.8	1e-17	89	131	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ Solyc04g079360.1.1 89 PFSPAEDEAILAAHAKYGNR-WATIARLLP-GRTDNAVKNHWNST 131 79****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.816	30	85	IPR017930	Myb domain
SuperFamily	SSF46689	1.08E-31	33	128	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-16	34	83	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-18	35	80	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.8E-25	36	88	IPR009057	Homeodomain-like
CDD	cd00167	4.73E-15	37	79	No hit	No description
SMART	SM00717	4.1E-16	86	134	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	21.413	87	136	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-23	89	135	IPR009057	Homeodomain-like
CDD	cd00167	1.91E-12	89	132	No hit	No description
Pfam	PF00249	1.2E-14	89	131	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MDFFNRCSTS SSSSESSSSE SSLSGKNPNK SERIKGPWSA EEDKILTKLV ERYGARNWSL 60 ISKYIKGRSG KSCRLRWCNQ LSPNVEHRPF SPAEDEAILA AHAKYGNRWA TIARLLPGRT 120 DNAVKNHWNS TLKRRYQQLI QQQNQNPVGF SDVKINGSGS GSGSGFGSCM EYLNVDESPK 180 VNNNNNNYAV TNNCSGEFDD PMTTLSLAPP GMSGDELPEK KTESFPAGFW DVMRGVIARE 240 VREYVASTGF PN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-40	32	135	1	104	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc04g079360.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FR828678	5e-06	Solanum lycopersicum mRNA for heat shock protein 70 isoform 1 (hsc70.1 gene)

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004238184.1	0.0	transcription factor MYB44-like
TrEMBL	A0A3Q7H2B0	0.0	A0A3Q7H2B0_SOLLC; Uncharacterized protein
STRING	Solyc04g079360.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7950	21	31
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	2e-56	myb domain protein 77

Link Out ? help Back to Top
Phytozome	Solyc04g079360.1.1
Entrez Gene	101262913

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]