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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g078420.1.1 | ||||||||
Common Name | LOC101244577 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 329aa MW: 35806.8 Da PI: 9.3151 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.6 | 1.6e-19 | 14 | 59 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEdell +v+++G+++W++I++ ++ gR++k+c++rw + Solyc04g078420.1.1 14 KGPWSPEEDELLQTLVEKHGPRNWTLISKSVP-GRSGKSCRLRWCNQ 59 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.7 | 2.3e-17 | 68 | 110 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+ +++a++++G++ W+tIar + gRt++ +k++w++ Solyc04g078420.1.1 68 AFTPEEDDTIIRAHAKFGNK-WATIARLLS-GRTDNAIKNHWNST 110 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.165 | 9 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.58E-32 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.1E-18 | 13 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-19 | 14 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-26 | 15 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.85E-17 | 16 | 58 | No hit | No description |
SMART | SM00717 | 8.2E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.459 | 66 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 68 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.19E-12 | 68 | 111 | No hit | No description |
Pfam | PF00249 | 7.3E-15 | 68 | 110 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MAAITQRKDS DRIKGPWSPE EDELLQTLVE KHGPRNWTLI SKSVPGRSGK SCRLRWCNQL 60 SPQVEHRAFT PEEDDTIIRA HAKFGNKWAT IARLLSGRTD NAIKNHWNST LKRKCPSMSE 120 DLSFETPQPP LKRSSSVGPC TNFSSVMNPG SPSGSDLSDS SLSGFPQSHV YRPVPRTGGI 180 FPLPPPPPVK QIEIPPSVPD PPTSLCLSLP GSGSGSIEKP TQSPKSPPLP PPPLPAVDKP 240 IPPSVPVTCP PSAFMGHLAQ SNQSYDFSAA PKSGEKQFFT PEFLSVLQDM IRKEVKSYMS 300 GFEQNGLCMQ TDAIRNAVIK RIGISKIE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 6e-40 | 13 | 114 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 6e-40 | 13 | 114 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.8797 | 0.0 | callus| flower| fruit| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g078420.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004238123.1 | 0.0 | transcription factor MYB44 | ||||
TrEMBL | A0A3Q7GA52 | 0.0 | A0A3Q7GA52_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g078420.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1586 | 24 | 71 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23290.1 | 9e-71 | myb domain protein 70 |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g078420.1.1 |
Entrez Gene | 101244577 |
Publications ? help Back to Top | |||
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