PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g077990.2.1 | ||||||||
Common Name | LOC101261022 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | LBD | ||||||||
Protein Properties | Length: 205aa MW: 22271.3 Da PI: 5.2866 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 95.6 | 5.5e-30 | 2 | 104 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlrr+C+++C+l+ ++ p++q +++ +v k+FG+s +++l++a+p+++r+++++sl++eA+ r+ +Pv Gavg++++++++ Solyc04g077990.2.1 2 SCNGCRVLRRRCSDNCTLRTCLdgiddPQAQGNATLFVSKFFGRSDLMSLIAAVPQNRRPALFKSLLFEACGRTVNPVTGAVGLLSTGNWH 92 6****************************************************************************************** PP DUF260 87 leqlkaelallk 98 ++q++++++l++ Solyc04g077990.2.1 93 VCQKAVQTVLAG 104 *****9998775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.852 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MSCNGCRVLR RRCSDNCTLR TCLDGIDDPQ AQGNATLFVS KFFGRSDLMS LIAAVPQNRR 60 PALFKSLLFE ACGRTVNPVT GAVGLLSTGN WHVCQKAVQT VLAGGNLRPV LAGILTPPYF 120 DNSFRCGGAW DMPNQFCNKS DSMFIDGSEQ IEGMEWISSE KRWNTSSCFG SETELSDVSL 180 GLDSGYGYAE CVKGEEPKLL NLFV* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g077990.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004238097.2 | 1e-150 | LOB domain-containing protein 38-like | ||||
Swissprot | Q9SN23 | 3e-51 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A3Q7G6A5 | 1e-149 | A0A3Q7G6A5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g077990.2.1 | 1e-150 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA966 | 24 | 90 | Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 1e-53 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g077990.2.1 |
Entrez Gene | 101261022 |
Publications ? help Back to Top | |||
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