PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g077960.1.1
Common NameLOC101255292
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 356aa    MW: 40020.3 Da    PI: 5.0357
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g077960.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.3e-102803201055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         rrRR+riN+++  L+ l+P+      +K++ +++Le+Av Y+k Lq
  Solyc04g077960.1.1 280 RRRRERINERLRILQNLVPNG-----TKVDISTMLEEAVTYVKFLQ 320
                         9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.034270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-14271335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-12275330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-11276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-7280320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEHVGAFFDE EWESLSKLFS STETADFMLQ LQGDHGSMFS MNGSDNAGSS YRTDNPQVAF  60
SQLSDEVNNN FQYLSQESSI TSCGSDHGMF FTNPSHDHLQ HSNNIDDVNN KLLQVAINNN  120
LPDEYQSIDF FDMDSKNLEN LCINQDFQAE MVCDQLDNAG ISPVPHKEMQ LKRKCDKIAH  180
ENPKKKSRGS QDAQKSTKKK MQPKKGKKNQ KMTQINNEEG EEETNNNADN QIAQSSSCCS  240
SEDDSNASQE LNGGTVSSNP KGKSRASRGA ATDPQSLYAR RRRERINERL RILQNLVPNG  300
TKVDISTMLE EAVTYVKFLQ LQIKLLSSDE LWMYAPLAYH GMDIGIYQKM LPNMQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g077960.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2341128e-12Solanum lycopersicum chromosome 12 clone LE_HBa-95O18, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238565.20.0transcription factor bHLH84
TrEMBLK4BUN30.0K4BUN3_SOLLC; Uncharacterized protein
STRINGSolyc04g077960.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.19e-39root hair defective 6-like 4
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]