PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HD-ZIP

Protein Properties

Length: 265aa MW: 30136.6 Da PI: 8.5829

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g077220.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.1	3.1e-18	120	174	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq ++Le+ F+++ +++ +++++LA++l+L rqV vWFqNrRa+ k Solyc04g077220.2.1 120 RKKLRLTKEQSDVLEDSFKEHTTLNSKQKRDLARRLSLRPRQVEVWFQNRRARTK 174 788899***********************************************98 PP
2	HD-ZIP_I/II	119.4	2e-38	120	209	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq+ +LE+sF+e+++L++++K +lar+L l+prqv+vWFqnrRARtk+kq+E+d+e L+++y+ lk+en+rL+ke ++L+ +l Solyc04g077220.2.1 120 RKKLRLTKEQSDVLEDSFKEHTTLNSKQKRDLARRLSLRPRQVEVWFQNRRARTKLKQTEVDCEILRKCYEDLKDENRRLNKEIQDLK-SL 209 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.2E-18	110	170	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.61E-18	115	177	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.232	116	176	IPR001356	Homeobox domain
SMART	SM00389	5.5E-16	118	180	IPR001356	Homeobox domain
Pfam	PF00046	1.2E-15	120	174	IPR001356	Homeobox domain
CDD	cd00086	5.81E-15	120	177	No hit	No description
PROSITE pattern	PS00027	0	151	174	IPR017970	Homeobox, conserved site
Pfam	PF02183	8.1E-10	176	210	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	2.4E-17	176	219	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MMCNTRLSLS LGLSTPPPHQ HNNKGKLSSN DDDNQELTLC LSTSSEFTNN YDNNNRINPQ 60 LLGGVNSSVS SFSNTSSVKR ERDHASSFDE EVENLETKKV LIISPKGLVD HNDDDDYGTR 120 KKLRLTKEQS DVLEDSFKEH TTLNSKQKRD LARRLSLRPR QVEVWFQNRR ARTKLKQTEV 180 DCEILRKCYE DLKDENRRLN KEIQDLKSLK KSQPFRVQLS AATLSMCPSC ERTYGGAATD 240 NSTKISFSIG DQKPHFYGIP SQIH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	124	TRKKLRL
2	168	176	RRARTKLKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.15296	0.0	callus\| fruit\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc04g077220.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004238055.1	0.0	homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	1e-64	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A3Q7G9I8	0.0	A0A3Q7G9I8_SOLLC; Uncharacterized protein
STRING	Solyc04g077220.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186
Representative plant	OGRP196	16	156

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	2e-62	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Solyc04g077220.2.1
Entrez Gene	101248097

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]