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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g077210.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TALE | ||||||||
Protein Properties | Length: 356aa MW: 40093.8 Da PI: 6.2373 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.7 | 2.3e-09 | 282 | 316 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++e+ LA+++gL+++q+ +WF N+R ++ Solyc04g077210.2.1 282 KWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 316 669*****************************885 PP | |||||||
2 | ELK | 38 | 3.6e-13 | 236 | 257 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrKYsgyL+sLkqE+s Solyc04g077210.2.1 236 ELKNHLLRKYSGYLSSLKQELS 257 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 8.8E-21 | 92 | 136 | IPR005540 | KNOX1 |
Pfam | PF03790 | 3.0E-22 | 93 | 135 | IPR005540 | KNOX1 |
SMART | SM01256 | 6.2E-26 | 143 | 194 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.1E-23 | 147 | 192 | IPR005541 | KNOX2 |
SMART | SM01188 | 3.5E-7 | 236 | 257 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.5E-10 | 236 | 257 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.296 | 236 | 256 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.762 | 256 | 319 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.35E-19 | 257 | 331 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.3E-12 | 258 | 323 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-27 | 261 | 322 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.69E-12 | 268 | 320 | No hit | No description |
Pfam | PF05920 | 1.0E-16 | 276 | 315 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 294 | 317 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001708 | Biological Process | cell fate specification | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MENNNYNNHV SGENSGGQRG HFFYGGNQVL GGAAPIYGRG GDCYDPMIVK TEGGGSTSHH 60 NHTFHYPSII RNHHHDSTET SGGGAGAGEV IEALKAKIIA HPQCSNLLDA YMDCQKVGAP 120 PEVAARLSAV RQEFEARQRA SLTDRDVSKD PELDQFMEAY YDMLVKYREE LTRPLQEAME 180 FMQKIEAQLN MLGNAPVRIF NSEDKCEGVG SSEEDQDNSG GETELPEIDP RAEDRELKNH 240 LLRKYSGYLS SLKQELSKKK KKGKLPKDAR QKLITWWELH YKWPYPSESE KVALAESTGL 300 DQKQINNWFI NQRKRHWKPS EDMQFMVMDG LHPQSAAALY MEGHYMGEGP FRLGQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.83 | 0.0 | cell culture| leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the apical meristems, in the newly emerged lateral primordia in the floral bud, in their vascular bundles and in the cortex parenchyma of the floral pedicle. Also present in the lateral tips of leaf primordia. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Appears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00675 | ChIP-seq | Transfer from GRMZM2G017087 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g077210.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001233807.2 | 0.0 | homeotic protein knotted-1 | ||||
Swissprot | Q41330 | 0.0 | KN1_SOLLC; Homeotic protein knotted-1 | ||||
TrEMBL | A0A3Q7G8D0 | 0.0 | A0A3Q7G8D0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g077210.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4973 | 23 | 33 | Representative plant | OGRP167 | 17 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 1e-136 | KNOTTED-like from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g077210.2.1 |
Entrez Gene | 544007 |
Publications ? help Back to Top | |||
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