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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g076680.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 64aa MW: 7049.23 Da PI: 11.0271 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.3 | 2.4e-29 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdae+ viifsstgklyeys+ Solyc04g076680.2.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEAGVIIFSSTGKLYEYSN 59 8***********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.3E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.964 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.44E-35 | 2 | 61 | No hit | No description |
SuperFamily | SSF55455 | 1.7E-28 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 64 aa Download sequence Send to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEAGVIIFSS TGKLYEYSNT 60 SKK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-19 | 1 | 61 | 1 | 61 | MEF2C |
5f28_B | 3e-19 | 1 | 61 | 1 | 61 | MEF2C |
5f28_C | 3e-19 | 1 | 61 | 1 | 61 | MEF2C |
5f28_D | 3e-19 | 1 | 61 | 1 | 61 | MEF2C |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.22797 | 2e-97 | callus| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g076680.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015073942.1 | 2e-36 | MADS-box transcription factor 23-like isoform X1 | ||||
Refseq | XP_025886615.1 | 2e-36 | MADS-box transcription factor 23 isoform X1 | ||||
Refseq | XP_025886616.1 | 2e-36 | MADS-box transcription factor 23 isoform X1 | ||||
Refseq | XP_027772034.1 | 2e-36 | MADS-box transcription factor 23-like isoform X1 | ||||
Refseq | XP_027772037.1 | 1e-37 | MADS-box transcription factor 27-like isoform X5 | ||||
Swissprot | Q6EP49 | 9e-34 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | M1AJM8 | 3e-36 | M1AJM8_SOLTU; Uncharacterized protein | ||||
STRING | Solyc04g076680.2.1 | 9e-38 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14210.1 | 7e-35 | AGAMOUS-like 44 |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g076680.2.1 |
Publications ? help Back to Top | |||
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