PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 349aa MW: 39462.7 Da PI: 6.9588

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g074170.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.5	3.6e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lvd++ ++G g+W++ ++ g++R++k+c++rw +yl Solyc04g074170.1.1 14 KGPWTPEEDQILVDYIDKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.2	1.4e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ W++Ia ++ gRt++++k++w+++l Solyc04g074170.1.1 67 RGKFSEEEEQTILHLHSILGNK-WSAIATHLS-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-26	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.212	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	2.16E-31	11	108	IPR009057	Homeodomain-like
SMART	SM00717	2.6E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-17	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	3.22E-12	16	61	No hit	No description
PROSITE profile	PS51294	26.56	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-26	65	117	IPR009057	Homeodomain-like
SMART	SM00717	7.3E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-15	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	7.74E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0009737	Biological Process	response to abscisic acid
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MGRSPCCDEN GLKKGPWTPE EDQILVDYID KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SEEEEQTILH LHSILGNKWS AIATHLSGRT DNEIKNFWNT HLKKKLIQMG 120 YDPMTHRPRT DLFANLPNII ALANLLQHHP LEDHAVRLQV EAAQLAKIQY LQFLFQSSNN 180 YNPPLPTPSS NTQHYNTNNN NNNLGDLGAF NLTNFVKENS TPSLSNLENQ TLFSNENNSC 240 SQLLHNNQDK THQVPFNFQT HLNNSINEIS CHNFNFDQKN NSPSSPLNIT NILPSPHSSS 300 HLPPLAEISI SNNQGHSSSN STNNGADQGS SSYWPELFFE EHFMHDIS*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MGRSPCCDEN GLKKGPWTPE EDQILVDYID KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SEEEEQTILH LHSILGNKWS AIATHLSGRT DNEIKNFWNT HLKKKLIQMG  120
YDPMTHRPRT DLFANLPNII ALANLLQHHP LEDHAVRLQV EAAQLAKIQY LQFLFQSSNN  180
YNPPLPTPSS NTQHYNTNNN NNNLGDLGAF NLTNFVKENS TPSLSNLENQ TLFSNENNSC  240
SQLLHNNQDK THQVPFNFQT HLNNSINEIS CHNFNFDQKN NSPSSPLNIT NILPSPHSSS  300
HLPPLAEISI SNNQGHSSSN STNNGADQGS SSYWPELFFE EHFMHDIS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-28	12	116	5	108	B-MYB
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269\|PubMed:24902892, ECO:0000269\|PubMed:25482809}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00180	DAP	Transfer from AT1G34670	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc04g074170.1.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU914755	0.0	S.lycopersicum DNA sequence from clone LE_HBa-178P3 on chromosome 4, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004238528.1	0.0	transcription factor MYB93
Swissprot	Q9S9Z2	1e-110	MYB93_ARATH; Transcription factor MYB93
TrEMBL	M1A7L8	0.0	M1A7L8_SOLTU; Uncharacterized protein
STRING	Solyc04g074170.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	1e-100	myb domain protein 93

Link Out ? help Back to Top
Phytozome	Solyc04g074170.1.1
Entrez Gene	101267601

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]