PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 453aa MW: 49582.8 Da PI: 6.524

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g071770.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	63.2	5.4e-20	209	258	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aaka++ a+++++g Solyc04g071770.2.1 209 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAAKAYDDAALRFRG 258 7******.******7.....337***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	4.2E-32	209	267	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	25.475	209	266	IPR001471	AP2/ERF domain
CDD	cd00018	5.27E-21	209	268	No hit	No description
Pfam	PF00847	1.9E-13	209	258	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.12E-22	209	267	IPR016177	DNA-binding domain
SMART	SM00380	4.2E-36	209	272	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.2E-11	210	221	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.2E-11	232	248	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MCILKVANQG DSGKYDRIPS TAGDSETTTN EGIPQPYEQS QSFEEMLQQQ IQQETEYLMS 60 ESANPMYTGY SQSRDMSAMV TALTHVVSGR REAEWGYRPD ISGVTTSFGG GGSGSIYSAN 120 SPSSSSSGSW AGQKRRRDQE ESVTGEQAQR GYGGIGEFKN GESSSSVKLE EDTSLATPQT 180 SSISTTTASQ TPPQASEVTG EETGERKRRY RGVRQRPWGK WAAEIRDPHK AARVWLGTFD 240 TAEAAAKAYD DAALRFRGNR AKLNFPENVR LLPQQQQQPT TRLAISTSSS TAAPRFQLMS 300 AASTRSPSPS PFFFQSYNQP PRQSDQQHQN QQQQLFQSSD MARDYWEYSQ LLQNPIDFHG 360 GQQSSSLLEQ MLLASSLGVL HSHTFPSSSS SSLATSAASS TTSPAYPLFY SAQQSRFFQP 420 QTHQNQSNSS SNSSNFPPPF WTSSGHYPPS SS*

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MCILKVANQG DSGKYDRIPS TAGDSETTTN EGIPQPYEQS QSFEEMLQQQ IQQETEYLMS  60
ESANPMYTGY SQSRDMSAMV TALTHVVSGR REAEWGYRPD ISGVTTSFGG GGSGSIYSAN  120
SPSSSSSGSW AGQKRRRDQE ESVTGEQAQR GYGGIGEFKN GESSSSVKLE EDTSLATPQT  180
SSISTTTASQ TPPQASEVTG EETGERKRRY RGVRQRPWGK WAAEIRDPHK AARVWLGTFD  240
TAEAAAKAYD DAALRFRGNR AKLNFPENVR LLPQQQQQPT TRLAISTSSS TAAPRFQLMS  300
AASTRSPSPS PFFFQSYNQP PRQSDQQHQN QQQQLFQSSD MARDYWEYSQ LLQNPIDFHG  360
GQQSSSLLEQ MLLASSLGVL HSHTFPSSSS SSLATSAASS TTSPAYPLFY SAQQSRFFQP  420
QTHQNQSNSS SNSSNFPPPF WTSSGHYPPS SS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	1e-22	208	269	1	63	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.14185	0.0	flower

Function -- GeneRIF ? help Back to Top
These results suggest that SlERF84 functions as a stress-responsive transcription factor in differentially modulation of abiotic and biotic stress tolerance.[SlERF84] [PMID: 30146417]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc04g071770.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004237817.1	0.0	ethylene-responsive transcription factor ABR1-like
TrEMBL	A0A3Q7G6K1	0.0	A0A3Q7G6K1_SOLLC; Uncharacterized protein
STRING	Solyc04g071770.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4322	21	40
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50080.1	2e-28	ethylene response factor 110

Link Out ? help Back to Top
Phytozome	Solyc04g071770.2.1
Entrez Gene	101251084

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Li Z, et al. A tomato ERF transcription factor, SlERF84, confers enhanced tolerance to drought and salt stress but negatively regulates immunity against Pseudomonas syringae pv. tomato DC3000. Plant Physiol. Biochem., 2018. 132: p. 683-695 [PMID:30146417]