PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g064860.1.1 | ||||||||
Common Name | LOC101246340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 234aa MW: 25871.3 Da PI: 7.9235 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.8 | 1.6e-19 | 30 | 79 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49 k+i n+ r+vtfskRr g++KKA+EL++L++ae+a+++ s ++++l+++ Solyc04g064860.1.1 30 KPIANQNSRHVTFSKRRLGLFKKASELCILTGAEIAIMVQSlKRQRLFTF 79 689************************************99567888888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.8E-24 | 22 | 82 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 19.96 | 22 | 70 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-22 | 23 | 111 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-10 | 24 | 44 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-19 | 32 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-10 | 44 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MNINNNTNAA ANSAAVAVKK TQGRRKIAIK PIANQNSRHV TFSKRRLGLF KKASELCILT 60 GAEIAIMVQS LKRQRLFTFG HPSADAVINR YLTGKSEEQK PAVDDQLNYV QQSNEYYSQI 120 CRELELEKKV KEEIVIDESK MVNGGSSSNN GGGGFWWNES IDEMGIEELE KFMFALEELK 180 KKVNMRCDEL SMINGSSSMA AAATASTSSM NQAIDYCASI VPFDFNYPGN AQF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g064860.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU468283 | 0.0 | S.lycopersicum DNA sequence from clone SL_MboI-14G22 on chromosome 4, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004237763.1 | 1e-174 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A3Q7G787 | 1e-173 | A0A3Q7G787_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g064860.1.1 | 1e-174 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2134 | 22 | 52 |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-27 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g064860.1.1 |
Entrez Gene | 101246340 |
Publications ? help Back to Top | |||
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