PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g064770.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C3H | ||||||||
Protein Properties | Length: 773aa MW: 86701.8 Da PI: 7.3757 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.6 | 3.3e-06 | 181 | 201 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr+f + G C+ G++C+F+H+ Solyc04g064770.1.1 181 TCRNFVK-GDCRWGASCRFSHD 201 6******.*************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.0E-5 | 92 | 117 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.925 | 92 | 118 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.7E-4 | 95 | 115 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.032 | 176 | 202 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.047 | 176 | 203 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-4 | 182 | 201 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1 | 227 | 252 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.934 | 227 | 253 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 773 aa Download sequence Send to blast |
MSPAFERQSN SHSPDNGRAQ SRRYVGRARG RSRGRGERRS RSRSRGRDKF RTRSRSRSRD 60 KGSMRVQNRS RSPHNSKRDP YASADRRTGL HMYSKVCRNF AVGNCRRGSQ CWFFHPDAAI 120 HRDGGNLEDN LSERLGSRPE RGHISRYNDS EGLGYQSRDK LPYLHNLEDE LHRNQSRGRI 180 TCRNFVKGDC RWGASCRFSH DSPSGDNYEK GTQSESFNYV QGNQATRTGK LLCEYFAAGK 240 CYKDNCKFSH DATSRNHEIR PSNDNSGHRF DGTNIWLDGP KWDNETRPSE LVKASGWDES 300 VVRTDTSIIV LTDGTNEKPD HHFENKNKAW EIEPQFINSD TERGVSPHRG SASHLNALNI 360 TESSVTQSFA NAQGLHLISQ ASDLNLESAS THVLGHSSNQ GASEIVLSTT TTQPYGSAES 420 FVQPHGLTKE NIARTLGSNV VNEFMNDRDG VHHVHLPGQS FSGTGFGMSS EHSAVLNETH 480 QEENVFLPVP STGHNKIEAL GTPEMLDSKV PQYLTVSGEQ VHQMETSPAS MTKKVEEGQR 540 ETQLQSVLNP CDSSGMLPSN PISALVHALY GQIIPEMRVP DNYHPPDGLE LNTSGNIKLP 600 PDNSFYLYGD SNKVSMDQMN QTSTVDPELG NNDQIDEVKK QKNELVDVDE KDKLALEESK 660 NVEENDHPGA MNLHGKVEEG SGNNNEKVMR LFKNALIEFV KEILKPIWKE GKMSREVHKT 720 IVKKVVDKVI GSIQGEQVAK TQEDIEEYLS RSKPKITKLV QAYVEWFMKN EV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 50 | 58 | RTRSRSRSR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.6252 | 0.0 | cell culture| floral bud| flower| fruit| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g064770.1.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU012067 | 0.0 | S.lycopersicum DNA sequence from clone LE_HBa-132O11 on chromosome 4, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004237735.1 | 0.0 | zinc finger CCCH domain-containing protein 55 | ||||
TrEMBL | A0A3Q7G6P5 | 0.0 | A0A3Q7G6P5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g064770.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5255 | 20 | 29 |
Representative plant | OGRP10278 | 6 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 2e-14 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g064770.1.1 |
Publications ? help Back to Top | |||
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