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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g064540.2.1 | ||||||||
Common Name | LOC101243701 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 310aa MW: 35716.4 Da PI: 9.8987 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.1 | 2e-18 | 18 | 63 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ Solyc04g064540.2.1 18 RGHWRPAEDEKLRQLVEQYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 63 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 53.8 | 4.5e-17 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +++++E+e+l+ a++ +G++ W++I+r ++ gRt++ +k++w+ + Solyc04g064540.2.1 70 RRPFSEDEEEKLIGAHRIHGNK-WALISRLFP-GRTDNAVKNHWHVL 114 679*******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.97 | 13 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.43E-29 | 16 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-15 | 17 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-17 | 18 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-27 | 19 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.20E-13 | 21 | 62 | No hit | No description |
PROSITE profile | PS51294 | 26.256 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-14 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-14 | 70 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-10 | 72 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-20 | 72 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MAEGGGSGDD TTRSSCPRGH WRPAEDEKLR QLVEQYGPQN WNSIAEKLQG RSGKSCRLRW 60 FNQLDPRINR RPFSEDEEEK LIGAHRIHGN KWALISRLFP GRTDNAVKNH WHVLMARKQR 120 EQSKICGKRS LYQQQQHDSF LSDSKSSCYG FRRRNNNNNN NNMRIQEGNY GSKINFFEFQ 180 NPNKDRVFSM STTYSSSSPE FCGRIGSHLF RESSIDQKSL RQNNLSFSSH GRGGDNNNCK 240 RSTTFQNPFS YVDRNEYDSI TERVVNVSNS TFSFGKILKE NIEQQKYGEE AREKKDIPFI 300 DFLGVGISS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-30 | 18 | 118 | 7 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00145 | DAP | Transfer from AT1G17950 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g064540.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004237755.1 | 0.0 | transcription factor MYB119-like | ||||
TrEMBL | A0A3Q7GYG9 | 0.0 | A0A3Q7GYG9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g064540.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1784 | 24 | 66 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 4e-65 | myb domain protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g064540.2.1 |
Entrez Gene | 101243701 |
Publications ? help Back to Top | |||
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