PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc04g064470.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

SBP

Protein Properties

Length: 168aa MW: 19060.1 Da PI: 9.4437

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc04g064470.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	39.7	1.3e-12	77	106	49	78
EEETTT--SS--S-STTTT-------S--- CS SBP 49 fhelsefDeekrsCrrrLakhnerrrkkqa 78 h l+efDe+krsCrrrL +h +rrrk+++ Solyc04g064470.1.1 77 VHVLEEFDEGKRSCRRRLTGHKKRRRKTHP 106 6**************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	10.844	6	104	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.20.1050.10	1.7E-6	28	62	IPR010987	Glutathione S-transferase, C-terminal-like
Pfam	PF03110	3.3E-7	77	103	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.14E-10	77	109	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MKSKDSSDCT EQALFDELKA LEEHLKAHMS LAPKMYHLEV ALGHFKKWSV TESLSHVRNY 60 MKLDPFLLPV VQGSILVHVL EEFDEGKRSC RRRLTGHKKR RRKTHPENVA NGASVNDEGN 120 YLLISLLRIL ANVQCNSLYG FHGFPAIYSF CMTKDVGKIN KVIAFTQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5mye_A	5e-21	1	63	110	185	Dehydroascorbate reductase family protein
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	102	KKRRRK
2	98	104	KRRRKTH

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.19048	2e-44	cell culture\| flower\| fruit\| leaf\| root\| stem\| trichome

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc04g064470.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU914527	1e-154	S.lycopersicum DNA sequence from clone LE_HBa-213A3 on chromosome 4, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3Q7G5S7	1e-122	A0A3Q7G5S7_SOLLC; Uncharacterized protein
STRING	Solyc04g064470.1.1	1e-123	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15809	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	3e-12	squamosa promoter-binding protein-like 12

Link Out ? help Back to Top
Phytozome	Solyc04g064470.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]