PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g056740.1.1
Common NameLOC101246819
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 181aa    MW: 20521.5 Da    PI: 7.4423
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g056740.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.32.3e-141563149
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        k+ien+    +tfskRr+g+ KKA+EL   Cd+++ ++++s+ gk + +
  Solyc04g056740.1.1 15 KKIENEDALLTTFSKRREGLYKKASELVRECDVDIGIMMISPAGKPHSF 63
                        689*****************************************98776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.605767IPR002100Transcription factor, MADS-box
SMARTSM004324.4E-20766IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-22878IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-11929IPR002100Transcription factor, MADS-box
PfamPF003193.9E-191663IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-112944IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-114465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MERKKTKGRQ KIPIKKIENE DALLTTFSKR REGLYKKASE LVRECDVDIG IMMISPAGKP  60
HSFFHPTLDA IVTRFQNPDM QLSQGILLDT ITARNKVNEL KNRLEELDVV EDATIAQTTF  120
YDQMAEIRQK GWWESIEQLN ADEVTIFNAW LSDTCSKMCH RLKQLENGAS SSLGRGSFGV  180
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g056740.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237582.11e-133agamous-like MADS-box protein AGL62
TrEMBLA0A3Q7G6651e-132A0A3Q7G665_SOLLC; Uncharacterized protein
STRINGSolyc04g056740.1.11e-133(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.13e-24M-type_MADS family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]